Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78100 292 / 9e-98 AUF1 auxin up-regulated f-box protein 1, F-box family protein (.1) AT1G22220 288 / 2e-96 AUF2 auxin up-regulated f-box protein 2, F-box family protein (.1) AT4G18380 212 / 4e-66 F-box family protein (.1.2) AT1G30200 187 / 1e-56 F-box family protein (.1.2) AT5G46170 166 / 3e-48 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G166500 [exp] 522 / 0 AT1G22220 295 / 1e-99 auxin up-regulated f-box protein 2, F-box family protein (.1) Potri.004G065900 [exp] 201 / 1e-61 AT5G46170 499 / 3e-177 F-box family protein (.1) Potri.011G082900 [exp] 196 / 2e-59 AT5G46170 488 / 9e-173 F-box family protein (.1) Potri.009G047600 [exp] 135 / 8e-37 AT4G18380 197 / 4e-60 F-box family protein (.1.2) Potri.003G203500 [exp] 45 / 5e-05 AT4G18380 49 / 2e-06 F-box family protein (.1.2) Potri.001G021600 [exp] 43 / 0.0001 AT1G22220 45 / 2e-05 auxin up-regulated f-box protein 2, F-box family protein (.1) Potri.001G022400 [exp] 43 / 0.0002 ND / Potri.001G021801 [exp] 43 / 0.0002 ND / Potri.019G023500 [exp] 43 / 0.0002 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041123 [exp] 286 / 1e-95 AT1G78100 250 / 2e-81 auxin up-regulated f-box protein 1, F-box family protein (.1) Lus10036451 [exp] 280 / 3e-93 AT1G78100 253 / 2e-82 auxin up-regulated f-box protein 1, F-box family protein (.1) Lus10038511 [exp] 156 / 1e-45 AT5G46170 453 / 5e-161 F-box family protein (.1) Lus10023298 [exp] 140 / 6e-38 AT5G46170 505 / 4e-179 F-box family protein (.1) Lus10013431 [exp] 68 / 7e-13 AT4G18380 102 / 4e-25 F-box family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G094600.1 pacid=42779857 polypeptide=Potri.002G094600.1.p locus=Potri.002G094600 ID=Potri.002G094600.1.v4.1 annot-version=v4.1 ATGATCATCATTAAGAATCAAATGGTCGAAGCAATGAACGGCTTTGATCGACTCCCGGACTCCTTAATCCTCCTCATCTTCAACTCGATTTCCGACATCA AGACCCTCATCTGTTGCCGTTCCGTTTCGAAACGTTTCAATTCACTCGTCCCCCAAACTGAATCCCTCTCTCTCAAAGTCGACTGCGTCATCTCACCCGA GTCGGACTCCGGCTCCTTCTTCACTCTCCTTAAATATCTCCTCAAATCCATCCACGATCTCCTCAAACCCGACACGAAACCCACAACCCGAAACCAAACC CAAAACTCACCGGCTCGTATCCTCAACCAGTTCGACCGGATCCGTGACCTACAAATCGAACTGCCAGCTGGCGACTTGAAATTAGAGAAAGGGGCCGTTA TCAAATGGAGAGCTGAATTCGGTAAGTCGTTGAAAAGCTGCGTTGTTCTCGGGTTTCGCCGCGTAGCAAATTCCGAGGGAAATAATGCTGAGTTGGATAT TGATTTCGCGGGAGGTTTAAAAACAAGGGTTGTGTGGACAATAAGTGCTTTGATTGCGGCATCGGCGAGGCATTATCTGTTGAACGACGTCGTTAAGGAG CATCGGGAGATGGAGAGGTTGGTGCTGGTGGACAGAGAAGGGGAAGGAACGGTGGCGATGGAGAAGGAAGGGTTGAGGGAGTGTAGGGAGGAGAGTGGGG TGGCGGCGCGTGGAGTAGATAGGCAGGAGGAGGGGAGGCGGACGGTGGTGCCAAGTGTGAGGATGAGGATGAGGCACGAGCAAAGAGTGCAGTTGAAGGA TGGAGTTTGGGTGGAAGGTGTGACTCTGGTGGTGGTAAGGCCTTGTAACGGTGGTGGTGATGTGGAGGATGCTGAGCTGGCATTAGGTGCGTTTGGTGGT GGGATTTATGGAGAAGCTGTACAGGTACTCCTTAAGAATGAGAGTTATTTATTGGAAATGAATTCCTTCTAA
AA sequence Show only first row Show all	>Potri.002G094600.1 pacid=42779857 polypeptide=Potri.002G094600.1.p locus=Potri.002G094600 ID=Potri.002G094600.1.v4.1 annot-version=v4.1 MIIIKNQMVEAMNGFDRLPDSLILLIFNSISDIKTLICCRSVSKRFNSLVPQTESLSLKVDCVISPESDSGSFFTLLKYLLKSIHDLLKPDTKPTTRNQT QNSPARILNQFDRIRDLQIELPAGDLKLEKGAVIKWRAEFGKSLKSCVVLGFRRVANSEGNNAELDIDFAGGLKTRVVWTISALIAASARHYLLNDVVKE HREMERLVLVDREGEGTVAMEKEGLRECREESGVAARGVDRQEEGRRTVVPSVRMRMRHEQRVQLKDGVWVEGVTLVVVRPCNGGGDVEDAELALGAFGG GIYGEAVQVLLKNESYLLEMNSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78100		AUF1	auxin up-regulated f-box prote...		Potri.002G094600 [exp]	0	1
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Potri.008G182500 [exp]	2.82	0.8378
AT3G60850			unknown protein		Potri.014G070200 [exp]	4.69	0.8450
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.002G067400 [exp]	6.32	0.7432	Pt-GBF4.1
AT2G06040			unknown protein		Potri.006G220600 [exp]	6.48	0.7945
AT2G36330			Uncharacterised protein family...		Potri.015G075100 [exp]	7.93	0.7416
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Potri.003G104200 [exp]	8.94	0.8119
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.018G086100 [exp]	12.48	0.8144
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Potri.001G026000 [exp]	21.21	0.7777
AT3G49601			unknown protein		Potri.006G233000 [exp]	21.97	0.7816
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.015G031100 [exp]	22.27	0.7574

Compare expression of checked genes

Potri.002G094600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.