Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78110 254 / 2e-82 unknown protein AT1G22230 194 / 1e-59 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G166400 [exp] 472 / 3e-168 AT1G78110 265 / 6e-87 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027930 [exp] 222 / 9e-71 AT1G78110 209 / 1e-65 unknown protein Lus10012052 [exp] 221 / 4e-70 AT1G78110 207 / 3e-65 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G094700.1 pacid=42776777 polypeptide=Potri.002G094700.1.p locus=Potri.002G094700 ID=Potri.002G094700.1.v4.1 annot-version=v4.1 ATGAAAGGAAGAGAAAGCAGGAGAGCTCCATCAGCAGATCTGTTAGTATGTTTTCCTTCTAGAGCCCATCTAACATTAATGCCCAAACCCATTTGCAGTC CTGCAAGGCCATTAGAACCCAGCAAACCCCACCAGAACCGCCACCACCACCGACAACAACGGCCCCACCATTTGAAGAAATCCAGCCCTAGGGGTGGTGG AAGCCGAGCCAGTCCTCTCTTATGGACCAAAACCAGGCAAATGGACTCGGAGTTATCAGAACCAACATCGCCAAAAGTAACATGCGCTGGGCAGATCAAA GTCAGACACAAGGCAAGCTCGTGCAAGAACTGGCAATCAGTCATGGAAGAGATTGAAAGGATTCACATCAGCAAGAAAAGCACCAAAAAATCAACCTGGC TTGACTCACTGGGATTCAAGAAAGATATAATGCAATTCTTAACATGTTTAAGAAACATAAGATTCGATTTTCGATGCTTTGGTTCCTTTCCAGCTCAATC AGATATCACTAGTAATGATGAAGAAGAATATGAAGAGTATGGGGAATATCAAGAAAACCATGTTGGAGCTGATGGAAGAATTGACAAAGAGGATTCAAGA ACCATATTTTCTAAATGGTTCATGATGCTGCAAGAGAATCAGAATAGCACTACTGGGTTCTTCAAAGAAGACGCTAAACAGAAAGAGAGGTCTTGCAATG ATGAGTCTCTAGCTGCGCCCTCTGTTCCACCACCAAATGCTCTCCTGCTTATGAGGTGTAGGTCTGCTCCGGCGAAGAGTTGGCAGGAAGAAGAGGAAGA AGAAGAAGAAGAAGAAGAAGAGCAAGAGCAAGACAGGAAGCAAGAAGAGAAGAAAGGAAAGAATTTGAAGGCCTTAATGGAGGAAGAGGGAAAAAACAGT AAAAAAGAGAACTTGGTAGTGATGAGCTATGATACAGATTTCTATAAACTTTCAACTGATATAGCTAAGGAAACATGGGTTGTTGGTGGAATGAAAGATA CAGTAGCAAGAAGTAGAAGTTGGAAGAGATGA
AA sequence Show only first row Show all	>Potri.002G094700.1 pacid=42776777 polypeptide=Potri.002G094700.1.p locus=Potri.002G094700 ID=Potri.002G094700.1.v4.1 annot-version=v4.1 MKGRESRRAPSADLLVCFPSRAHLTLMPKPICSPARPLEPSKPHQNRHHHRQQRPHHLKKSSPRGGGSRASPLLWTKTRQMDSELSEPTSPKVTCAGQIK VRHKASSCKNWQSVMEEIERIHISKKSTKKSTWLDSLGFKKDIMQFLTCLRNIRFDFRCFGSFPAQSDITSNDEEEYEEYGEYQENHVGADGRIDKEDSR TIFSKWFMMLQENQNSTTGFFKEDAKQKERSCNDESLAAPSVPPPNALLLMRCRSAPAKSWQEEEEEEEEEEEEQEQDRKQEEKKGKNLKALMEEEGKNS KKENLVVMSYDTDFYKLSTDIAKETWVVGGMKDTVARSRSWKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78110			unknown protein		Potri.002G094700 [exp]	0	1
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Potri.003G116500 [exp]	5.38	0.8484
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.001G121300 [exp]	12.00	0.8160
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Potri.008G057800 [exp]	13.78	0.7753
AT3G06140			RING/U-box superfamily protein...		Potri.005G036400 [exp]	17.83	0.8068
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Potri.013G155600 [exp]	22.51	0.6917
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Potri.003G205800 [exp]	22.71	0.7701
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Potri.001G450700 [exp]	24.28	0.7935
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Potri.005G035800 [exp]	32.12	0.7213	HAP5.6
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037600 [exp]	38.36	0.6870
AT1G13480			Protein of unknown function (D...		Potri.008G109500 [exp]	41.27	0.7826

Compare expression of checked genes

Potri.002G094700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.