Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65160 451 / 3e-152 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) AT5G10090 426 / 1e-142 TPR13 tetratricopeptide repeat 13, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G78120 417 / 3e-140 TPR12 tetratricopeptide repeat 12, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G42580 330 / 3e-104 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT1G53300 325 / 4e-102 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT3G58620 317 / 2e-99 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT3G14950 296 / 3e-91 TTL2 tetratricopetide-repeat thioredoxin-like 2 (.1) AT5G12430 102 / 3e-22 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT2G41520 100 / 8e-22 TPR15 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) AT4G12400 71 / 2e-12 Hop3 Hop3, stress-inducible protein, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G166300 [exp] 922 / 0 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.007G091200 [exp] 519 / 1e-178 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.005G076800 [exp] 517 / 5e-178 AT5G65160 619 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G111500 [exp] 348 / 4e-111 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.001G392601 [exp] 164 / 1e-44 AT1G53300 260 / 1e-79 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.009G050200 [exp] 100 / 2e-21 AT5G12430 821 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.001G255000 [exp] 93 / 2e-19 AT5G12430 738 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.006G047700 [exp] 79 / 5e-15 AT2G41520 640 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.014G141800 [exp] 69 / 4e-12 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022500 [exp] 453 / 3e-153 AT5G65160 652 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10016804 [exp] 442 / 4e-149 AT5G65160 635 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10028154 [exp] 343 / 3e-109 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10042854 [exp] 337 / 8e-107 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10005022 [exp] 83 / 4e-16 AT5G12430 791 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10019041 [exp] 82 / 8e-16 AT5G12430 787 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10031042 [exp] 77 / 2e-14 AT2G41520 505 / 4e-160 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10035117 [exp] 70 / 6e-13 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 72 / 9e-13 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031418 [exp] 65 / 1e-10 AT1G56440 436 / 1e-150 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13181 [poplar] [flax] TPR_8 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.002G094800.1 pacid=42779652 polypeptide=Potri.002G094800.1.p locus=Potri.002G094800 ID=Potri.002G094800.1.v4.1 annot-version=v4.1 ATGGCAGAAATCACAACATACTCGATGGAGCACGGATTAGGCTGTGGCCCAGAATGGAGAGCTTTCCTACGCCGGCATTTCTGGCCGAGAAAAACATCAG TGCATTCACTGCCTGCAGAAAGCACCAACAATATCCTCGGCCTGCCCAGTATTGCTAATAATTCAGAGAGACAGCGAAGCAAACCCCAGCCTGTCGTCCT TGATTCCTCCAATTTGCCCAAGTCTTCCCCACAAGTAGAAAAGAAACAGAAGAGTTTGCATCGTTCAAGGCCTTCGACTTTTCATCAAAACAAAGAAGGT TCAAGTTCGGGCGGGATCAAAGTGTCCCAAACCAATAAGACTAATCTAAGAAGGGACTCCAACAATGATTCCAGAGAGCTTGGCAGGATTGTCATAACTA ATCATCAAAAGTCCAATGACAACAAGGTTCTTGTTCGAGCCACTTCTGGCAATGTAATGTTGCGAGGTCATCTGGGCAACCTAAGACAGTCAGGGAATGG GAATTTTATAGGGAATGATAGTCCTAATGCTACTGTTAGGACTGTGGATTACCTTCACAAGAACCTTCAAGAGGCAAATTTATCGTCTAGACCCAGAAAT TGCTACAGTAAACTTGGCAGTAATAGTGTTATGGGGAACATTGTGAGGCAGCCTAGTGGTGAATTTCGGCAGGGACAAGGTCTGATAACCAGCATGGATC CTGAAGTTTTAAAGAATAAGGGAAATGAGAGGTACAGGCAGGGAAGATATGAACAGGCCTTGGTTTGGTATGATCGTGCAATTTCTCTTGATTCAAATAA GGCAACATATAGAAGTAATAGAAGTGCAGCTTTGATAGGATTAGGCCGTCTTACAGAAGCTGTTGTTGAGTGCAAAGAAGCTATCAGGCTCGATCCTTCT TATCAAAGAGCCCATTACCGTTTGGCAACATTATATTTCAGACTGGGAGAAACAGAGAAAGCTCTGTATCACTACAAACAGTCAGGCCCCAATACTGACT CCAAGGAAGTTGCTCAAGCTCAGGCACTTCAAATGCACCTGAACAGGTGCACTGAAGCTCGAAAACTAAAAGAATGGAATAGATTGCTGAAGGAGACTGG GCGCTCAATTTCCTCGGGTGCTGATTCAGCTCCACAGGTTTATGCTATGCAAGCCGAGGCACTATTGAGGCTCCACAGGCATCAAGAAGCCTACACGGCC TACCAAAAGGGACCGAATTTTTCTGTTGACTTTTATACCAAGTTATTTGGTCTGACTGTAGCACCTTATATCTTAATGATCGGGGCACAGATTTACATGG CTGCGGGCAGGTTTGAAGACGCTATGGCTACAGCTCAGCAAGCAGCTCGACTCGATCTCAGGAACGGGGAGGTTAGCAATGTGGTAAAGAGTGTCAGAGC AGTAGCATCTGCTAGATTGAGTGGCAACTCGTTATTCAAGGCATCAAAATTCACCGAGGCATGTATCGCATATAGTGAAGGCCTAGAATACGACGCTTAC AACTCAATTTTGCTCTGCAACCGAGCAGCCTGTAGGTCCAAGCTTGGCCAATATGAAAAGGCTGTAGAAGACTGCACTGTGGCTCTCAGTGTGCAGCCTA ATTATAGCAAGGCCAGGCTAAGAAGGGCGCACTGCAATGCCGAGCTGGGAAGATGGGAAGCTTCGATTCAAGATTTTGAGATGTTGATAAGAGAAAGTCC AGCCGATGAGGAGGTGGGCCGGGCCTTGCTTGACTCACAGGTTCAACTTAAGAAGCAACGTGGTGAAGACACCAAGGACCTCAAATATGGTTCTAAATTC TAA
AA sequence Show only first row Show all	>Potri.002G094800.1 pacid=42779652 polypeptide=Potri.002G094800.1.p locus=Potri.002G094800 ID=Potri.002G094800.1.v4.1 annot-version=v4.1 MAEITTYSMEHGLGCGPEWRAFLRRHFWPRKTSVHSLPAESTNNILGLPSIANNSERQRSKPQPVVLDSSNLPKSSPQVEKKQKSLHRSRPSTFHQNKEG SSSGGIKVSQTNKTNLRRDSNNDSRELGRIVITNHQKSNDNKVLVRATSGNVMLRGHLGNLRQSGNGNFIGNDSPNATVRTVDYLHKNLQEANLSSRPRN CYSKLGSNSVMGNIVRQPSGEFRQGQGLITSMDPEVLKNKGNERYRQGRYEQALVWYDRAISLDSNKATYRSNRSAALIGLGRLTEAVVECKEAIRLDPS YQRAHYRLATLYFRLGETEKALYHYKQSGPNTDSKEVAQAQALQMHLNRCTEARKLKEWNRLLKETGRSISSGADSAPQVYAMQAEALLRLHRHQEAYTA YQKGPNFSVDFYTKLFGLTVAPYILMIGAQIYMAAGRFEDAMATAQQAARLDLRNGEVSNVVKSVRAVASARLSGNSLFKASKFTEACIAYSEGLEYDAY NSILLCNRAACRSKLGQYEKAVEDCTVALSVQPNYSKARLRRAHCNAELGRWEASIQDFEMLIRESPADEEVGRALLDSQVQLKKQRGEDTKDLKYGSKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Potri.002G094800 [exp]	0	1
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Potri.013G157200 [exp]	11.91	0.9349
AT1G58120			unknown protein		Potri.002G104500 [exp]	13.26	0.9168
					Potri.013G157250 [exp]	13.96	0.7792
AT5G28237			Pyridoxal-5'-phosphate-depende...		Potri.011G024900 [exp]	14.49	0.9249
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G172801 [exp]	18.97	0.9249
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Potri.016G117500 [exp]	19.44	0.8810	Pt-FAD3.5
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Potri.018G065600 [exp]	20.66	0.8810	OPR3.2
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Potri.006G236500 [exp]	20.78	0.9264
AT5G34930			arogenate dehydrogenase (.1)		Potri.006G062600 [exp]	23.15	0.8349
AT1G22170			Phosphoglycerate mutase family...		Potri.002G093300 [exp]	24.28	0.8433

Compare expression of checked genes

Potri.002G094800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.