Plant FIBer expression Database

Potri.002G094900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G35830 89 / 1e-19 VQ motif-containing protein (.1)
AT5G65170 85 / 5e-18 VQ motif-containing protein (.1)
AT4G39720 80 / 1e-16 VQ motif-containing protein (.1)
AT2G41010 45 / 4e-05 ATCAMBP25 calmodulin (CAM)-binding protein of 25 kDa (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G166100
[exp]
545 / 0 AT5G65170 94 / 8e-21 VQ motif-containing protein (.1)
Potri.005G076600
[exp]
207 / 2e-61 AT5G65170 70 / 7e-13 VQ motif-containing protein (.1)
Potri.007G091600
[exp]
174 / 3e-49 AT5G65170 72 / 2e-13 VQ motif-containing protein (.1)
Potri.001G158800
[exp]
53 / 7e-08 AT4G39720 58 / 6e-10 VQ motif-containing protein (.1)
Potri.006G032300
[exp]
47 / 1e-05 AT3G56880 127 / 1e-35 VQ motif-containing protein (.1)
Potri.016G029600
[exp]
45 / 5e-05 AT3G56880 125 / 4e-35 VQ motif-containing protein (.1)
Potri.003G075800
[exp]
45 / 5e-05 AT3G22160 54 / 8e-09 VQ motif-containing protein (.1)
Potri.006G006300
[exp]
41 / 0.0008 AT4G39720 49 / 2e-06 VQ motif-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024738
[exp]
94 / 8e-21 AT1G35830 92 / 3e-21 VQ motif-containing protein (.1)
Lus10006941
[exp]
92 / 3e-20 AT1G35830 93 / 3e-21 VQ motif-containing protein (.1)
Lus10016814
[exp]
42 / 0.0003 AT4G39720 52 / 4e-08 VQ motif-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05678 VQ VQ motif
Representative CDS sequence
>Potri.002G094900.1 pacid=42778101 polypeptide=Potri.002G094900.1.p locus=Potri.002G094900 ID=Potri.002G094900.1.v4.1 annot-version=v4.1
ATGGATTCTGGTAATAGCGGTAGTATGCAATCGTCTAGTGGTGGTGATGAAGAGTATGACTCAAGGCCAGAGTCACTCCCAGCTTTCTTGAATCCTTCTA
CCCACAACTTTGGTCCTTCTCTGCTTTCTCACCAACAACCGGTCACTTTGTTTGATCCTACACCGAGTCTTTTCCACGTTTTCTCTCAATCTCAACCAAA
CCCAATTATGGTTCAGTCACGAGGCCTGAGATCTGACCCGAATTGCACTGATCTTGGTATCAACCTACCAGACTCATTATCATCAAGTCAATCAGCGGTT
TTGGGTGTTCAAGGATCAAGTCAAGCTCTACCTTCCTCTAAGCAATTGCGATCGGTTCATGACGATGGAGGACGCTCTTCTTCACCGTCTCATGACCAGA
CACATGGGATAGCAAGAAACCCCAAGAAGAGAACAAGGGCATCAAGAAGGGCACCCACTACAGTTCTCACGACAGACACGTCCAATTTCAGACAAATGGT
GCAAGAGTTCACAGGGATCCCAGCACCACCATTTTCAGGCTCACCGTTTACTCGAAGGCTCGATCTTTTTGGCCCTGGCTCGGGTTTGAGGTCTGGTCAT
CTGGAACCACTCTACCCTCTACGTCCCACAGCTCAAAAGGTTCATCATCAGCAAACCCCATTTTTATCTTCTTCTTTTCCTTCACTTCTCAACAATAATA
TTGTTCATACCACTAATATTGCTAGTACTAGTACTACCGCTAACAATAACAATACTATTTCCACAGCCGCAACTAGTACTTTCAATCCCAGTTCACTAAA
CTACCAACTGCCTGATGATATAGGCCTACACAAACAAACTCGAAATCTGCTAAACATGCAAAATCAAATGCTTTCAATTCACCCCCTTCTACACCCCCCT
CCTCCTCCTCCTCCTCAACAATTACCTAATGTGCCTGGTTTGGGTGCAAATTCTAGAGCAAGTTTGCCTCTACCTTCCCTTGAGGAATTGGGTATGGGCC
ATGGATATGTTAATGCAAACCTTAGTGGGCTAACAAGTCATGTAACAACAGAAGAGATGAGATTATCGAATGATGGGAGTCATCATAACTTGAGGTCATT
GAATGGGAATTATGGTAATATGCAACGTGTTAATAGCTGTAAGTTGAATTACTCGTCAGCTTCATCAGATTTTCACCATGAAAAGGGTTTAGAGAATGTT
TCTTCAAGAGGTACAGAGGGTACAGTTGATTCATGGATCTGTCCTTCAGAGTTCAGAGTAGGAGATCATTAA
AA sequence
>Potri.002G094900.1 pacid=42778101 polypeptide=Potri.002G094900.1.p locus=Potri.002G094900 ID=Potri.002G094900.1.v4.1 annot-version=v4.1
MDSGNSGSMQSSSGGDEEYDSRPESLPAFLNPSTHNFGPSLLSHQQPVTLFDPTPSLFHVFSQSQPNPIMVQSRGLRSDPNCTDLGINLPDSLSSSQSAV
LGVQGSSQALPSSKQLRSVHDDGGRSSSPSHDQTHGIARNPKKRTRASRRAPTTVLTTDTSNFRQMVQEFTGIPAPPFSGSPFTRRLDLFGPGSGLRSGH
LEPLYPLRPTAQKVHHQQTPFLSSSFPSLLNNNIVHTTNIASTSTTANNNNTISTAATSTFNPSSLNYQLPDDIGLHKQTRNLLNMQNQMLSIHPLLHPP
PPPPPQQLPNVPGLGANSRASLPLPSLEELGMGHGYVNANLSGLTSHVTTEEMRLSNDGSHHNLRSLNGNYGNMQRVNSCKLNYSSASSDFHHEKGLENV
SSRGTEGTVDSWICPSEFRVGDH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G35830 VQ motif-containing protein (.... Potri.002G094900
[exp]
0 1
AT1G44350 ILL6 IAA-leucine resistant (ILR)-li... Potri.005G178900
[exp]
1.73 0.8561
AT4G17900 PLATZ transcription factor fam... Potri.019G051200
[exp]
3.46 0.8469
AT4G37370 CYP81D8 "cytochrome P450, family 81, s... Potri.007G050000
[exp]
3.74 0.8660
AT4G08850 Leucine-rich repeat receptor-l... Potri.019G129300
[exp]
5.09 0.8659
AT5G65170 VQ motif-containing protein (.... Potri.007G091600
[exp]
6.32 0.8435
AT5G19620 TOC75-V, EMB213... translocon at the outer envelo... Potri.001G019000
[exp]
6.32 0.8313
AT4G30080 ARF ARF16 auxin response factor 16 (.1) Potri.010G223200
[exp]
6.92 0.8284
Potri.004G044750
[exp]
7.41 0.8288
AT4G30080 ARF ARF16 auxin response factor 16 (.1) Potri.008G039000
[exp]
8.30 0.7983
Potri.019G057625
[exp]
9.00 0.8377

Potri.002G094900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.