Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78140 442 / 2e-156 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G41040 298 / 9e-100 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G13710 50 / 1e-06 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT4G34360 45 / 5e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G76090 44 / 7e-05 SMT3 sterol methyltransferase 3 (.1) AT1G66680 44 / 8e-05 AR401 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G63410 42 / 0.0003 VTE3, APG1, IEP37, E37 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G20330 42 / 0.0004 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G165700 [exp] 593 / 0 AT1G78140 407 / 1e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.018G120000 [exp] 331 / 1e-112 AT2G41040 418 / 6e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G060400 [exp] 324 / 6e-110 AT2G41040 461 / 5e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.016G056000 [exp] 56 / 2e-08 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.001G263700 [exp] 48 / 6e-06 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.009G058600 [exp] 46 / 3e-05 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.008G188600 [exp] 45 / 3e-05 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.002G016300 [exp] 44 / 8e-05 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.005G245800 [exp] 44 / 0.0002 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008815 [exp] 322 / 8e-109 AT2G41040 451 / 9e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10023995 [exp] 47 / 1e-05 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10013038 [exp] 46 / 2e-05 AT1G23360 369 / 3e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10029124 [exp] 45 / 3e-05 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10033614 [exp] 44 / 0.0001 AT1G23360 48 / 3e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10008619 [exp] 44 / 0.0002 AT1G26850 727 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10042197 [exp] 43 / 0.0003 AT1G26850 706 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10014711 [exp] 42 / 0.0006 AT3G63410 424 / 3e-150 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.002G095100.1 pacid=42778121 polypeptide=Potri.002G095100.1.p locus=Potri.002G095100 ID=Potri.002G095100.1.v4.1 annot-version=v4.1 ATGGCCTCCGCAATCCTTAGCAACCTCTCGTCTGCGTTTCTCCCGAGTCAACTCAGCAAATCGAGCCGAGCTCTTTTCACACCGCACTGTACCCCTACCT TTAAACGCACTAGTTTCGCGGCAAAAATTCGTGCCTCTTCTACCGCCTTTGTTGAGACCAGGCCAACGGATCCTGTGGTGGTTGAAAAGGATGTCAGTAG CAGCAAGAACATCCTAGCCTGTCCCGTGTGTTACGAGCCCGTTACTTTGATCGGTGCTAACGTCTTATCTGTAGATTCTGCACGCGGATCTAGCTTGCAG TGCAGCACCTGTAAGAAGACTTACTCAGGCAAGGAAACACATCTTGAATTGACGGTAGCAAGTGGGTCTAAGGCATATGATGATGCTATGCCTATGGCCA CAGAATTTTTCAGAACACCATTCATATCATTCCTTTACGAGAGAGGTTGGCGTCAAAACTTTGTATGGGGTGGTTTTCCAGGCCCGGAGAAGGAGTTTGA AATGATGAAGGATTACCTCAAGCCAGTTTTAGGTGGCAATATTCTAGATGCTAGTTGCGGTAGTGGCTTATTTTCAAGATTGTTTGCCAAGAGTGGGTTG TTTTCTCTTGTTACGGCTCTGGACTACTCAGAAAACATGCTGAAACAGTGCTATGAATTCATCAAGCAGGAGGAAAACTTTCCAAAAGAGAACTTAATAT TGGTTAGAGCTGATATAGCTAGACTTCCTTTCGTTTCTGGTTCCCTTGACGCTGTCCATGCTGGTGCTGCTATACACTGTTGGCCTTCACCATCAGCGGC TGTAGCCGAAGTAAGTCGAGTTTTGAGGCCCGGAGGAGTGTTTGTCGCTACCACCTACATACTTGATGGGCCTTTCAGTTTCATCCCATTTTTGAAGCCT ATAAGCCAGAGATTCACACAAGCATCAGGCAACAACTTCTTCCTATCTGAACGTGAACTAGAAGCCGTCTGTAGAGCCTGTGGACTAGTTAATTTTACAT GTACAAGAAATAGGCAATTTATAATGTTTTCTGCAACAAAACCCAGCTAA
AA sequence Show only first row Show all	>Potri.002G095100.1 pacid=42778121 polypeptide=Potri.002G095100.1.p locus=Potri.002G095100 ID=Potri.002G095100.1.v4.1 annot-version=v4.1 MASAILSNLSSAFLPSQLSKSSRALFTPHCTPTFKRTSFAAKIRASSTAFVETRPTDPVVVEKDVSSSKNILACPVCYEPVTLIGANVLSVDSARGSSLQ CSTCKKTYSGKETHLELTVASGSKAYDDAMPMATEFFRTPFISFLYERGWRQNFVWGGFPGPEKEFEMMKDYLKPVLGGNILDASCGSGLFSRLFAKSGL FSLVTALDYSENMLKQCYEFIKQEENFPKENLILVRADIARLPFVSGSLDAVHAGAAIHCWPSPSAAVAEVSRVLRPGGVFVATTYILDGPFSFIPFLKP ISQRFTQASGNNFFLSERELEAVCRACGLVNFTCTRNRQFIMFSATKPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78140			S-adenosyl-L-methionine-depend...		Potri.002G095100 [exp]	0	1
AT5G02070			Protein kinase family protein ...		Potri.006G118500 [exp]	1.41	0.9251
AT4G14090			UDP-Glycosyltransferase superf...		Potri.004G083700 [exp]	4.00	0.9250
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072000 [exp]	4.89	0.9210	Pt-CYP704.1
AT2G36430			Plant protein of unknown funct...		Potri.005G116100 [exp]	7.07	0.9110
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.013G030833 [exp]	7.14	0.9234
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.013G030900 [exp]	8.48	0.9230	PTRCAT1,AAT1.3
AT5G47740			Adenine nucleotide alpha hydro...		Potri.006G003900 [exp]	11.04	0.8694
AT1G48210			Protein kinase superfamily pro...		Potri.010G001500 [exp]	18.97	0.9094
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.002G121900 [exp]	22.58	0.8621	Pt-IFS1.53
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.010G139300 [exp]	25.49	0.8674

Compare expression of checked genes

Potri.002G095100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.