Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78160 474 / 2e-158 APUM7 pumilio 7 (.1) AT1G22240 462 / 1e-155 APUM8 pumilio 8 (.1) AT4G08840 387 / 8e-126 APUM11 pumilio 11 (.1) AT1G35730 386 / 2e-125 APUM9 pumilio 9 (.1) AT1G35750 354 / 2e-113 APUM10 pumilio 10 (.1) AT5G56510 339 / 4e-107 APUM12 pumilio 12 (.1) AT2G29190 177 / 7e-46 APUM2 pumilio 2 (.1.2) AT2G29140 175 / 3e-45 APUM3 pumilio 3 (.1) AT5G43090 170 / 4e-45 APUM13 pumilio 13 (.1) AT2G29200 174 / 5e-45 APUM1 pumilio 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G222300 [exp] 375 / 7e-119 AT5G56510 497 / 4e-168 pumilio 12 (.1) Potri.001G002600 [exp] 375 / 7e-119 AT5G56510 525 / 3e-179 pumilio 12 (.1) Potri.002G120900 [exp] 286 / 6e-88 AT5G56510 278 / 2e-86 pumilio 12 (.1) Potri.014G020300 [exp] 285 / 2e-87 AT5G56510 260 / 1e-79 pumilio 12 (.1) Potri.001G298000 [exp] 192 / 2e-52 AT5G56510 211 / 2e-60 pumilio 12 (.1) Potri.010G225600 [exp] 184 / 4e-48 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.008G036500 [exp] 184 / 4e-48 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.010G201100 [exp] 177 / 4e-46 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.003G009900 [exp] 176 / 1e-45 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036469 [exp] 463 / 5e-156 AT1G78160 441 / 5e-149 pumilio 7 (.1) Lus10041139 [exp] 461 / 6e-154 AT1G78160 437 / 4e-146 pumilio 7 (.1) Lus10024793 [exp] 279 / 1e-84 AT5G56510 283 / 1e-87 pumilio 12 (.1) Lus10018710 [exp] 278 / 3e-84 AT5G56510 281 / 3e-87 pumilio 12 (.1) Lus10037976 [exp] 180 / 6e-47 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10016513 [exp] 178 / 3e-46 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10000516 [exp] 169 / 4e-46 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10002708 [exp] 176 / 1e-45 AT2G29200 1009 / 0.0 pumilio 1 (.1) Lus10001567 [exp] 175 / 3e-45 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10004976 [exp] 175 / 4e-45 AT2G29200 971 / 0.0 pumilio 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00806 [poplar] [flax] PUF Pumilio-family RNA binding repeat
Representative CDS sequence Show only first row Show all	>Potri.002G095400.1 pacid=42779585 polypeptide=Potri.002G095400.1.p locus=Potri.002G095400 ID=Potri.002G095400.1.v4.1 annot-version=v4.1 ATGATGATGATGATGATGTATAAACAACAATCTGAGAGGGAAAAGAAGGTTATGGAGAAGATGAGGAAGAGAGAGGAAGAGCTGTTGAATGGAGGAGGAC TGAATGGGTCATATTTGAGGCTTCTTCATAAGAAGTCACTTTTGAGTGGTTCTCCTTTGAGTGATACTAGTGTATCATTGCAATCATCACCTGAGTTTTC TCCTTCAAGCTCTTTCTCAAATGGGTTTTTCTCTTCTGAGGATGCTTCAGGCTCACCATTTGCAACAGCACCTCCTCTTTCTCCTCCTTTATTTGAAGAG GCTACGTGTCATCAATCACCCAGTTACCTTTACTTTAATGGACTGAGTTTGGATGATTCTAAATCACCTCATAACATCAATGATTTGTCTCAAGATTTTG TTAGAATGAATATTAGAGAGGAACAAAATGGCGGCGTTAAAATGAAGGGATTTGAGATGGACCCCCATGGTGATGGTTTTGGTTTTGGTGATGTAGGTGT TGATGGTTCTCTGGGTGTGGGTATTGTACCATATAATGTTAAAAATCATGGCTCTTATGGTGGTTTAAACAATGGGGATTTTAGCAATGATGGTTGTGAT TCGGAAAGCTTTCAATCATCTACTCGTGGAGTTTCTTTGAGTTGTAATGATGTTATGGGATGTAGATTTAATGGATTTGAAAAGGGTGGTTTTGATTCAG TGGAGTCTTTTCCTGCCCATAATCACCAGTCCGATGATTTTTGTCCTGGCTCTAGGTGGTTTAAAAACCAGAGCGATTATTTTTTGGAGCAGAGCAAAAA ACAGGGAAAATGGAGATATGAGGGGCCTCATCAATCGCAGAACCCATTTAGCACTAGACCTTTCGTTAACGACGCTCTTGTTGGCCCTCAGCAATATAAA ATGGATTCTAATGGAGGCAGGGTAGCCATGGATTCATTGAGTTACTCTTTGTTGAATGGTCATGATCGATTGGGTGAAAGTCTGCTGTTAAAAGGAAGGA CTGTACCAAGCACTCGCAACGGTGTTCCTCAGTCTCTCATGTCTATGAAAGGTGCAGGGGATATGGAAAGTCTTTGCCGCGAGGATAGTTTCATTTTACA AGGAAGAGGTCTCAATCATGCCAGCCATAGAGGACATGATGCTTTGAGAGATCACAATAAGAATCACTTCAATGAGATTGCTGTGCGGAACATGCAGGGG GAAAGCATTAAACCAGATGATTGTTCTCTTCATGAAGGAATACGTGAAAATGGTCGGAGACTAGGTAGTCATAGCCCATTGCCAATGGCTCCAAGTTTTA CTTCCTTGAATGAGTTCCGGGGTTATGTATACTTAATGGCACAAGATCAGAATGGTTGCCTTTTCTTACAAAAGATTTTTGAAGAGGGAACAAGCCAAGA TGTTGAACTAATATTTGATGAAATTATTGGCCATATTGTTGAACTTATGTTGAAGCCATTTGGCAATTATGTCGTCCAGAAGCTATTGGATGTGTGCGAT GAAAAACATAGATTGCTGATAGTGCGCATGATCACCAATGAGCCCGGAATGCTTGTTAGAATTTGCTTAAACACATACGGCACACGAGTAGTGCAGAGGT TGATCGAGACTCTCAAAACCAGGCAGCAGATTTCTTCAGTAATATTGGCCCTGAAACCTGGTGTGCTTGATCTTGTCAAGGATCAGAATGGAAATCATGT TATTCAGCGTTGTTTGAACCTCCTGAGCAATGAAGATAACAAGTTCATTTTTGATGCTGCGACAAAGTTTTGTGTTGAGATCGCAACTCATCGTCATGGA TGCTGTGTAATGCAACGATGTATTGCACATGCCACTGGAAAACATTGGGATAAGTTAATGACTGAAATTTCTAGAAACGGACTTCTTCTTGCACAAGATC CTTTCGGAAATTATGTTGTTCAATACATCATGGATCTGAAGAACTCATGTAGCATTGCCATCTTGCTTTCTCAATTCAAAGGGAACTATGTGCACCTCTC CATGCAAAAATTTGGCAGCCATGTGGTTGAGAGGTGCCTTGGGCATTTTGAAGAGAGCCGGTCACAAATTGTTCTTGAACTGCTCTCAGTGCCTCGCTTT GAACAGCTGCTGCAGGATCCATTTGCCAACTACGTCATTCAATGTGCTTTAGCAGTTACCAAGGGTGCTCTTCATTCTTTACTGGTCGAAGCAGTCCGAC CACACTCAACGTTACGCACCAGCCCGTATTGTAAGAGAATCTTCTCACGAAACCTGTTGAAGAAATGA
AA sequence Show only first row Show all	>Potri.002G095400.1 pacid=42779585 polypeptide=Potri.002G095400.1.p locus=Potri.002G095400 ID=Potri.002G095400.1.v4.1 annot-version=v4.1 MMMMMMYKQQSEREKKVMEKMRKREEELLNGGGLNGSYLRLLHKKSLLSGSPLSDTSVSLQSSPEFSPSSSFSNGFFSSEDASGSPFATAPPLSPPLFEE ATCHQSPSYLYFNGLSLDDSKSPHNINDLSQDFVRMNIREEQNGGVKMKGFEMDPHGDGFGFGDVGVDGSLGVGIVPYNVKNHGSYGGLNNGDFSNDGCD SESFQSSTRGVSLSCNDVMGCRFNGFEKGGFDSVESFPAHNHQSDDFCPGSRWFKNQSDYFLEQSKKQGKWRYEGPHQSQNPFSTRPFVNDALVGPQQYK MDSNGGRVAMDSLSYSLLNGHDRLGESLLLKGRTVPSTRNGVPQSLMSMKGAGDMESLCREDSFILQGRGLNHASHRGHDALRDHNKNHFNEIAVRNMQG ESIKPDDCSLHEGIRENGRRLGSHSPLPMAPSFTSLNEFRGYVYLMAQDQNGCLFLQKIFEEGTSQDVELIFDEIIGHIVELMLKPFGNYVVQKLLDVCD EKHRLLIVRMITNEPGMLVRICLNTYGTRVVQRLIETLKTRQQISSVILALKPGVLDLVKDQNGNHVIQRCLNLLSNEDNKFIFDAATKFCVEIATHRHG CCVMQRCIAHATGKHWDKLMTEISRNGLLLAQDPFGNYVVQYIMDLKNSCSIAILLSQFKGNYVHLSMQKFGSHVVERCLGHFEESRSQIVLELLSVPRF EQLLQDPFANYVIQCALAVTKGALHSLLVEAVRPHSTLRTSPYCKRIFSRNLLKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78160		APUM7	pumilio 7 (.1)		Potri.002G095400 [exp]	0	1
AT3G04880		DRT102	DNA-DAMAGE-REPAIR/TOLERATION 2...		Potri.005G050600 [exp]	1.41	0.8630	Pt-DRT102.2
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Potri.015G105702 [exp]	5.47	0.8188
					Potri.002G154150 [exp]	7.87	0.8449
AT4G19450			Major facilitator superfamily ...		Potri.003G105600 [exp]	9.89	0.7056
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Potri.004G235900 [exp]	10.90	0.7830	Pt-ATRLI1.1
AT1G79510			Uncharacterized conserved prot...		Potri.008G083400 [exp]	11.22	0.7942
					Potri.004G234200 [exp]	11.83	0.8208
					Potri.016G052901 [exp]	16.00	0.7635
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.006G049000 [exp]	17.49	0.8109
AT1G01540			Protein kinase superfamily pro...		Potri.004G073801 [exp]	17.66	0.7886

Compare expression of checked genes

Potri.002G095400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.