Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HT1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34580 671 / 0 Major facilitator superfamily protein (.1) AT1G11260 527 / 0 ATSTP1, STP1 sugar transporter 1 (.1) AT4G21480 527 / 0 STP12 sugar transporter protein 12 (.1) AT3G19940 522 / 0 Major facilitator superfamily protein (.1) AT3G19930 522 / 0 ATSTP4, STP4 sugar transporter 4 (.1) AT5G26340 517 / 0 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT4G02050 512 / 9e-179 STP7 sugar transporter protein 7 (.1) AT1G50310 508 / 2e-177 ATSTP9 sugar transporter 9 (.1) AT5G23270 492 / 5e-171 ATSTP11, STP11 sugar transporter 11 (.1) AT5G61520 476 / 8e-165 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G096000 [exp] 692 / 0 AT1G34580 594 / 0.0 Major facilitator superfamily protein (.1) Potri.005G090700 [exp] 526 / 0 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.004G233500 [exp] 523 / 0 AT5G61520 574 / 0.0 Major facilitator superfamily protein (.1.2) Potri.018G113300 [exp] 520 / 0 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.016G120700 [exp] 509 / 9e-178 AT5G61520 570 / 0.0 Major facilitator superfamily protein (.1.2) Potri.007G073900 [exp] 508 / 3e-177 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1) Potri.006G189100 [exp] 504 / 1e-175 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.007G073850 [exp] 503 / 1e-175 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 503 / 1e-175 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020934 [exp] 705 / 0 AT1G34580 664 / 0.0 Major facilitator superfamily protein (.1) Lus10013441 [exp] 533 / 0 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10018422 [exp] 524 / 0 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10002597 [exp] 508 / 1e-177 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10009656 [exp] 507 / 6e-177 AT5G61520 608 / 0.0 Major facilitator superfamily protein (.1.2) Lus10010534 [exp] 502 / 1e-174 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 500 / 8e-174 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10021924 [exp] 499 / 2e-173 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10036325 [exp] 471 / 1e-162 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10040991 [exp] 461 / 8e-159 AT3G19940 666 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.002G095900.1 pacid=42779489 polypeptide=Potri.002G095900.1.p locus=Potri.002G095900 ID=Potri.002G095900.1.v4.1 annot-version=v4.1 ATGACCGGAGGAGGTTTTGTTGCCAATGGACCTGCCAGTGGCTTTAACGGTAAGATAACTGTGCCGGTGGTGATCACTTGCATCGTTGCTGCATCAAGTG GTCTCATTTTCGGCTATGACATTGGGATTTCAGGAGGTGTAACAACAATGGCACCATTTCTAATTAAATTTTTCCCTGAGGTATTCAGAAAGGCAACAAA GGTCAAAACAAACATGTATTGTCAATTTGATAGCCAACTTTTAACAGCATTCACATCATCACTCTACATAGCAGGGCTAGCTTCTTCCCTTGTAGCTAGC CGCCTCACTGCAGCAGTGGGCCGCAAGAACATCATGGTGATTGGTGGCTGCACTTTCCTTGCCGGTGCCGCCATCAATGGTGGCGCTGCCAATATTGCCA TGCTCCTACTTGGTCGTATTTTGCTTGGATTTGGGGTTGGTTTCACTAACCAGGCAACTCCTGTTTACCTATCAGAGGTAGCACCTCCAAAATGGCGTGG TGCGTTCAGCACTGGCTTCCAGTTTTTTATTGGCGTTGGGGTAGTAGCAGCCAATTGCATAAATTTTGGAATGGCGAAGCATAGCTGGGGGTGGCGTTTC TCCCTCGGCCTCGCCGTTGTACCCGCTGCTATAATGACAATTGGTGCGCTCTTCATCTCAGACACGCCAAGTAGCCTAGTGGAGCGTGGCAAGGTTGAAC AAGCTCGACAATCTCTGACCAAAGTTCGAGGAATCAACAGTAACGTGGATGCTGAACTAGCTGATCTTCTTAAGTTCAATGAAATGGCAAAAGATGCCAA AAAGGAACCTTTTTTGACCATATTGGAGAGGCAGTATAGGCCTCACCTGGTGATGTCAATTGCTATACCTTTTTTCCAACAGCTAACTGGGATTAACATC ATTGCATTCTACGCGCCAGTTATTTTTCAATCAGTTGGCTTTGGAAGCGATTCGGCATTAATTGCAGCTATTGTGCTAGGATTAGTTAATCTTGGTTCAA TCCTTGTGTCCACGGGGATGGTTGATCGGCATGGTCGAAGATTTTTGTTCATAATTGGAGGGATTCAAATGTTCATCTGTCAGGTTGCGGTGACCATAGT GCTGGCTGTCACTACGGGCATTTCAGGCACGAAGCAGATCTCCAAGGGCCACGGCGTATTATTACTTGTTTTAATGTGCATCTATGCTGCTGGTTTTGGT TGGTCTTGGGGTCCCCTAAGCTGGCTCGTGCCAAGTGAAATATTTCCTATGAAAATTCGATCCACAGGCCAAAGCATAACTGTTGGTGTGAATTTTGCTA CTACATTTGTGCTATCACAAACCTTTTTGACCATGCTATGTCACTTCAAATTTGGCACATTCCTGTTCTATGCTGGTTGGATTGCCTTGATGACAGTTTT TATAGTACTTTTCTTGCCGGAGACAAAAGGAATTCCCTTGGACTCGATGCATGAAGTGTGGCAACGTCACTGGTATTGGGGTCGGTTTGTTCGAGGCAGT GGGAGGTAA
AA sequence Show only first row Show all	>Potri.002G095900.1 pacid=42779489 polypeptide=Potri.002G095900.1.p locus=Potri.002G095900 ID=Potri.002G095900.1.v4.1 annot-version=v4.1 MTGGGFVANGPASGFNGKITVPVVITCIVAASSGLIFGYDIGISGGVTTMAPFLIKFFPEVFRKATKVKTNMYCQFDSQLLTAFTSSLYIAGLASSLVAS RLTAAVGRKNIMVIGGCTFLAGAAINGGAANIAMLLLGRILLGFGVGFTNQATPVYLSEVAPPKWRGAFSTGFQFFIGVGVVAANCINFGMAKHSWGWRF SLGLAVVPAAIMTIGALFISDTPSSLVERGKVEQARQSLTKVRGINSNVDAELADLLKFNEMAKDAKKEPFLTILERQYRPHLVMSIAIPFFQQLTGINI IAFYAPVIFQSVGFGSDSALIAAIVLGLVNLGSILVSTGMVDRHGRRFLFIIGGIQMFICQVAVTIVLAVTTGISGTKQISKGHGVLLLVLMCIYAAGFG WSWGPLSWLVPSEIFPMKIRSTGQSITVGVNFATTFVLSQTFLTMLCHFKFGTFLFYAGWIALMTVFIVLFLPETKGIPLDSMHEVWQRHWYWGRFVRGS GR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34580			Major facilitator superfamily ...		Potri.002G095900 [exp]	0	1	HT1.1
AT5G48810		B5#3, ATB5-B, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.014G019200 [exp]	1.00	0.9423
AT3G54960		ATPDI1, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.010G222100 [exp]	1.41	0.9303
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.016G075800 [exp]	2.64	0.9125
AT4G22880		TT18, TDS4, ANS...	TANNIN DEFICIENT SEED 4, ANTHO...		Potri.003G119100 [exp]	10.24	0.9140	Pt-ANS.2
AT3G59710			NAD(P)-binding Rossmann-fold s...		Potri.013G127700 [exp]	13.41	0.9250
AT4G02370			Protein of unknown function, D...		Potri.014G127500 [exp]	13.60	0.8687
AT4G24204			RING/U-box superfamily protein...		Potri.007G050500 [exp]	13.74	0.8743
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.008G021000 [exp]	14.83	0.8630
					Potri.006G256900 [exp]	15.49	0.8809
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Potri.018G075000 [exp]	18.81	0.9130

Compare expression of checked genes

Potri.002G095900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.