Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HT1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34580 593 / 0 Major facilitator superfamily protein (.1) AT4G21480 508 / 2e-177 STP12 sugar transporter protein 12 (.1) AT1G11260 503 / 3e-175 ATSTP1, STP1 sugar transporter 1 (.1) AT3G19940 500 / 4e-174 Major facilitator superfamily protein (.1) AT1G50310 489 / 5e-170 ATSTP9 sugar transporter 9 (.1) AT5G26340 479 / 7e-166 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT3G19930 465 / 2e-160 ATSTP4, STP4 sugar transporter 4 (.1) AT4G02050 459 / 3e-158 STP7 sugar transporter protein 7 (.1) AT5G61520 436 / 3e-149 Major facilitator superfamily protein (.1.2) AT5G23270 434 / 2e-148 ATSTP11, STP11 sugar transporter 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G095900 [exp] 689 / 0 AT1G34580 672 / 0.0 Major facilitator superfamily protein (.1) Potri.005G090700 [exp] 479 / 4e-166 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.004G033600 [exp] 477 / 6e-165 AT1G11260 822 / 0.0 sugar transporter 1 (.1) Potri.016G120700 [exp] 476 / 6e-165 AT5G61520 570 / 0.0 Major facilitator superfamily protein (.1.2) Potri.004G233500 [exp] 474 / 3e-164 AT5G61520 574 / 0.0 Major facilitator superfamily protein (.1.2) Potri.018G113300 [exp] 474 / 8e-164 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.011G042100 [exp] 472 / 5e-163 AT1G11260 808 / 0.0 sugar transporter 1 (.1) Potri.007G072800 [exp] 471 / 7e-163 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073900 [exp] 470 / 2e-162 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020934 [exp] 612 / 0 AT1G34580 664 / 0.0 Major facilitator superfamily protein (.1) Lus10018422 [exp] 510 / 6e-178 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10013441 [exp] 506 / 3e-176 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10002597 [exp] 491 / 4e-171 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10009656 [exp] 470 / 2e-162 AT5G61520 608 / 0.0 Major facilitator superfamily protein (.1.2) Lus10010534 [exp] 470 / 5e-162 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 468 / 3e-161 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10021924 [exp] 457 / 8e-157 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10040991 [exp] 436 / 1e-148 AT3G19940 666 / 0.0 Major facilitator superfamily protein (.1) Lus10036325 [exp] 424 / 2e-144 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.002G096000.1 pacid=42777689 polypeptide=Potri.002G096000.1.p locus=Potri.002G096000 ID=Potri.002G096000.1.v4.1 annot-version=v4.1 ATGGCAGTTGCCCTTGAGATTGGAGATGCCAATAACTTAGACGGGAATAATAATTCTGGGAAGATAACATTGTCAGTGTTGATAACATGCATCGTTGCTG CATCAGGCGGCCTCATTTTTGGCTACGACATTGGAATCTCAGGAGGTGTTACAACAATGCCATCTTTTCTTGAGACATTCTTTCCTTCAGTGGCGAAGCA GGCTGCAGAGGCCAAAAACACAAACATGTACTGTATGTATGACAGCCATGCCTTGACATTATTCACATCATCTCTCTACATTGCAGGGTTAGTTGCATCA CCTGTAGCTAGCCGCCTCATAGCTACAACGGGTCGGAAAAACGTCATGATGCTAGGTGGTTGCATCTTCTTTGCTGGTGCTGCCTTGAACGGCTTGGCTG CAAATGTTCTCATGCTCATTCTGGGTAGACTCATGCTTGGCTTTGGGGTTGGTTTCAATAACCAGGCAACTCCGGTTTACCTATCAGAGGTGGCGCCACC AAAATGGCGTGGTGCGTTCAGCACGGGCTTTCAATTCTTTAATGGAATTGGGGTGTTATCAGCCAATTGCATAAATTTTTTCGTGGCCAAGCACAGCTGG GGATGGCGTTTATCCCTCGGCCTTGCTTCTGTGCCCGCTGCTATAATGACAATAGGTGCACTCTGCATCCTAGACACGCCTAGCAGCCTAGTGGAGCGTG GCAAACTCGTAGAAGCTCGGCAGTCTCTGATTAAAATCCGAGGAAATAAAAGTAACGTGGACGATGAACTAGCTGATCTCGTTAACTCTAGTGAACTCGC TAAAGCTGCCCACGAACCTCTTAAGACTATATTTGAGAGGCGTAATAGACCACACCTAGTGATGGCAATCGCCATTCCCTTTTTTCAACAATTCACTGGG ATTGGTGTAGTGGCATTCTATACGCCAGTTGTCTTTTCATCAGTTGGCTCTGGACAAGATTCCGCTTTAACTGCAGCAATTGTTCTAGGTGCAGTTAACC TTGGTTCAATCCTTGTGTCGACGGTTGTGGTGGATCGTTATGGTCGAAGATTATTATTCATAATTGGTGGAATTCAAATGTTCATATGTCAGGTTGCGTT GTCTATTCTGCTTTATATGGCAACAGGTGCTGCAGGCACTGAGAAGATCCCCAAGGGCTATGACCTATTGTTACTCGTTTTCATGTGCATCTATGCTGCT GGTTTCGGCTGGTCTTGGAATCCTCTTACCGTGCTCATTCCTAGTGAAATCTTTCCTATGAGAATTCGAGCCACGGGAGTAAGCATAAATATTGCCGTTG CTTTCTCTGCTACGTTTGTACTATCACAGTTCTTCTTAACCATGCTATGTCACCTCAAACACAGCCTATTTCTGTTCTATGGCTGTTGGATTGCCGTGAT GACGGTCTTTGTTGTGGTTTTTTTGCCGGAGACAAGAGGAATTCCTTTGGAAAAAATGGATGAGGTGTGGATGAAGCACTGGTACTGGCGTCGATTTGTT GGAGGGCAGTTGTAG
AA sequence Show only first row Show all	>Potri.002G096000.1 pacid=42777689 polypeptide=Potri.002G096000.1.p locus=Potri.002G096000 ID=Potri.002G096000.1.v4.1 annot-version=v4.1 MAVALEIGDANNLDGNNNSGKITLSVLITCIVAASGGLIFGYDIGISGGVTTMPSFLETFFPSVAKQAAEAKNTNMYCMYDSHALTLFTSSLYIAGLVAS PVASRLIATTGRKNVMMLGGCIFFAGAALNGLAANVLMLILGRLMLGFGVGFNNQATPVYLSEVAPPKWRGAFSTGFQFFNGIGVLSANCINFFVAKHSW GWRLSLGLASVPAAIMTIGALCILDTPSSLVERGKLVEARQSLIKIRGNKSNVDDELADLVNSSELAKAAHEPLKTIFERRNRPHLVMAIAIPFFQQFTG IGVVAFYTPVVFSSVGSGQDSALTAAIVLGAVNLGSILVSTVVVDRYGRRLLFIIGGIQMFICQVALSILLYMATGAAGTEKIPKGYDLLLLVFMCIYAA GFGWSWNPLTVLIPSEIFPMRIRATGVSINIAVAFSATFVLSQFFLTMLCHLKHSLFLFYGCWIAVMTVFVVVFLPETRGIPLEKMDEVWMKHWYWRRFV GGQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34580			Major facilitator superfamily ...		Potri.002G096000 [exp]	0	1	HT1.2
AT1G78400			Pectin lyase-like superfamily ...		Potri.009G038100 [exp]	3.16	0.9345
AT1G05700			Leucine-rich repeat transmembr...		Potri.013G030100 [exp]	6.70	0.7560
					Potri.004G018900 [exp]	7.48	0.8185
AT5G20710		BGAL7	beta-galactosidase 7 (.1)		Potri.001G025800 [exp]	8.48	0.7984
					Potri.002G020850 [exp]	9.21	0.7470
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.019G014407 [exp]	24.33	0.6711
AT1G67320		EMB2813	EMBRYO DEFECTIVE 2813, DNA pri...		Potri.017G053801 [exp]	31.32	0.8151
AT5G62490		ATHVA22B	ARABIDOPSIS THALIANA HVA22 HOM...		Potri.014G148600 [exp]	48.29	0.8006
AT5G58610			PHD finger transcription facto...		Potri.009G072600 [exp]	51.18	0.6515
AT5G05800			unknown protein		Potri.007G062850 [exp]	59.57	0.7266

Compare expression of checked genes

Potri.002G096000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.