Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78170 119 / 3e-33 unknown protein AT1G22250 89 / 8e-22 unknown protein AT4G08910 70 / 1e-14 unknown protein AT2G33510 42 / 8e-05 AtCFL1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G165300 [exp] 367 / 5e-131 AT1G78170 124 / 4e-35 unknown protein Potri.002G231400 [exp] 80 / 2e-18 AT4G08910 54 / 4e-09 unknown protein Potri.014G150900 [exp] 71 / 3e-15 AT4G08910 49 / 3e-07 unknown protein Potri.001G062000 [exp] 41 / 0.0002 AT2G33510 152 / 4e-47 unknown protein Potri.003G165800 [exp] 40 / 0.0004 AT2G33510 162 / 7e-51 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025524 [exp] 61 / 3e-11 AT4G08910 49 / 4e-07 unknown protein Lus10026738 [exp] 61 / 4e-11 AT1G78170 54 / 1e-08 unknown protein Lus10001804 [exp] 44 / 3e-05 AT2G33510 145 / 8e-44 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G096100.1 pacid=42778924 polypeptide=Potri.002G096100.1.p locus=Potri.002G096100 ID=Potri.002G096100.1.v4.1 annot-version=v4.1 ATGGTCTCCTTTCAAGCACTCCCATCTCCAAACGGGAAAAAGTTAATCCCGGGGCTTGATGATTCATCAAAGAAGAGAAAGTGGGAAGATCCACAAACTG AAGGGATCCTCGAGAAAAGATCAAATCCAGAAAGCAGAAAATCCTTCTGTGAAATCGAGCTGCACCTTGAGACTCCATTACCTCTGGAGTGGCAAAGATG CCTCGATATTCAGTCAGGGCAGATACATTTCTATAATACAAGGACCCATAAGAGAACATCAAGAGATCCAAGGGGAAGCCCCGAGCCACCAAGTCCTGAT CATGATATGAGCTTAGAACTTGAGCTAAACCTACCATACGATCAATCACAAAGGAAAAGCTATACACACGACCATATTACAAAGCAGAATCCTGGTGGCT CCATCCGGGGTTTTGGTGATTTGTTCAAGGAATCTAGCAGAGATAATGGGAGTTCAGGAGGACTAACACGGCGTCCATCGTGGTTAGCATTTGAAAAGGA TCAGCAAGAAATGCTAGCGACAGTTTGCACAAAGTGCCACATGTTGGTGATGCTTTGCAGGTCCTCTCCTACCTGCCCTAACTGCAAATTCCTGCATCCA CTAGAGCAAAGCCCTCCTAAACTATTCAAGCAAAGGCTTAGCCTCTTTTGCTAA
AA sequence Show only first row Show all	>Potri.002G096100.1 pacid=42778924 polypeptide=Potri.002G096100.1.p locus=Potri.002G096100 ID=Potri.002G096100.1.v4.1 annot-version=v4.1 MVSFQALPSPNGKKLIPGLDDSSKKRKWEDPQTEGILEKRSNPESRKSFCEIELHLETPLPLEWQRCLDIQSGQIHFYNTRTHKRTSRDPRGSPEPPSPD HDMSLELELNLPYDQSQRKSYTHDHITKQNPGGSIRGFGDLFKESSRDNGSSGGLTRRPSWLAFEKDQQEMLATVCTKCHMLVMLCRSSPTCPNCKFLHP LEQSPPKLFKQRLSLFC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78170			unknown protein		Potri.002G096100 [exp]	0	1
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.017G063966 [exp]	1.41	0.9494
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Potri.006G220100 [exp]	2.82	0.9414
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077500 [exp]	5.19	0.9181
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.018G051400 [exp]	9.53	0.9256
AT2G30370		EPFL6, CHAL	EPF1-like 6, CHALLAH, allergen...		Potri.013G155500 [exp]	10.00	0.9268
AT1G14440	ZF_HD	ATHB31, ZHD4	ZINC FINGER HOMEODOMAIN 4, hom...		Potri.002G035200 [exp]	10.19	0.9283
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Potri.019G076600 [exp]	11.48	0.8522
AT2G18350	ZF_HD	ATHB24, ZHD6	ZINC FINGER HOMEODOMAIN 6, hom...		Potri.005G227900 [exp]	11.48	0.9264
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.001G058600 [exp]	14.49	0.9072
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Potri.007G043100 [exp]	16.09	0.8789

Compare expression of checked genes

Potri.002G096100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.