Plant FIBer expression Database

Potri.002G096200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018607
[exp]
43 / 3e-06 ND 33 / 0.009
PFAM info
Representative CDS sequence
>Potri.002G096200.2 pacid=42778439 polypeptide=Potri.002G096200.2.p locus=Potri.002G096200 ID=Potri.002G096200.2.v4.1 annot-version=v4.1
ATGGAAGGAGCAGAGAAGATGGAGAGCAAAGACAAACCTCTAAAATCACAAGTCGCCGTTCGATGTGCCAAAGCTGCCATTCTTCTCTCCTTGCTCAAAT
CGTTCCCAAATCGCCACTTTACAACTTCAATCGACGACCAGAGAGAGGAGAAGGAGATGATGATGAGAGAGATCGGCGATCTGAAGATGGAATTGGCGAG
GGAGCGATTGAAGAGTAAGAGGATCAAACTCTGTGGCTTGATGGAAGTGATTCTTCAGGTCATGGCTGTGCTTTCTATTTCAACTTTCCTTTTAGTGATT
GTGCTCATGCAAGGTTGA
AA sequence
>Potri.002G096200.2 pacid=42778439 polypeptide=Potri.002G096200.2.p locus=Potri.002G096200 ID=Potri.002G096200.2.v4.1 annot-version=v4.1
MEGAEKMESKDKPLKSQVAVRCAKAAILLSLLKSFPNRHFTTSIDDQREEKEMMMREIGDLKMELARERLKSKRIKLCGLMEVILQVMAVLSISTFLLVI
VLMQG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78172 unknown protein Potri.002G096200
[exp]
0 1
AT2G42110 unknown protein Potri.016G045700
[exp]
1.00 0.9190
AT4G15140 unknown protein Potri.006G008000
[exp]
3.74 0.8919
AT3G54400 Eukaryotic aspartyl protease f... Potri.001G028200
[exp]
4.00 0.8725
AT3G18050 unknown protein Potri.015G040900
[exp]
4.47 0.8714
Potri.014G192701
[exp]
5.19 0.8881
AT3G18030 ATHAL3A HALOTOLERANCE DETERMINANT 3, A... Potri.015G089600
[exp]
6.92 0.8384
AT3G13275 unknown protein Potri.007G107500
[exp]
6.92 0.8696
AT5G45280 Pectinacetylesterase family pr... Potri.003G046200
[exp]
7.21 0.8377
AT5G13760 Plasma-membrane choline transp... Potri.001G261900
[exp]
8.66 0.8347
AT5G03050 unknown protein Potri.014G110300
[exp]
9.79 0.7778

Potri.002G096200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.