Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22275 787 / 0 ZYP1b Myosin heavy chain-related protein (.1) AT1G22260 771 / 0 AtZYP1a, ZYP1a Myosin heavy chain-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036517 [exp] 758 / 0 AT1G22260 663 / 0.0 Myosin heavy chain-related protein (.1) Lus10032798 [exp] 633 / 0 AT1G22260 575 / 0.0 Myosin heavy chain-related protein (.1) Lus10041143 [exp] 539 / 0 AT1G22260 451 / 8e-148 Myosin heavy chain-related protein (.1) Lus10010242 [exp] 204 / 8e-56 AT1G22275 279 / 5e-83 Myosin heavy chain-related protein (.1) Lus10036473 [exp] 66 / 3e-12 AT1G22275 86 / 6e-20 Myosin heavy chain-related protein (.1) Lus10019419 [exp] 59 / 4e-10 AT1G22260 47 / 4e-07 Myosin heavy chain-related protein (.1) Lus10030096 [exp] 47 / 3e-06 AT1G22275 47 / 4e-07 Myosin heavy chain-related protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G096400.1 pacid=42777746 polypeptide=Potri.002G096400.1.p locus=Potri.002G096400 ID=Potri.002G096400.1.v4.1 annot-version=v4.1 ATGCAATCGGTTATCGATTTCGAGATGCAGAAATTAGGGTTTCCAAGCATGAAGACTTTTGATCAGTTCAAATCGCTATCAGGATCCGCAAAGAACTTCT CATTCAATTCGCGGTCATCAACGGACTCGACTACATCGGGAAGTTTCGCTAATTTGAAGATCACTGCAGAGAAATTGGTCAAAGAACAGGCTTCCGTCAA AACAGATCTCGGGATGGCGAACACCAAGCTGAAGAAATCAATGGAGCATATCCATGTGTTGGAGGATAAGTTGCAAAACGCGTTTAATGAGAATGCAAAG CTTAAAGTAAAGCAGAAAGAGGATGAGAAGCTGTGGAAAGGATTGGAATCAAAATTTTCTTCAACAAAGACTCTGTGTGATCAATTGACAGAGACCTTAC AACACTTAGCCGGTCAGGTTCAGGATGCTGAAAAGGATAAGGAGTTTTTTGAAGGCAAACTGTCTGCAAGCTCAAATGGCATTGACTATTTGAACCAACA ACTGAATGATTTATCTGTGAAATTAGGCTCTGCGGAGGAAACTATTAGAACTCGTGAAAGGGAACTACAGGAACTTGAAATCAATAAGGAGGAAAGAAAT AAGATCTACATAGAAGAACTACGCCAAACTACCAGTCTGATAGAAGAAAAAGATGCCATGCTAAAGAAGTTTGAAACAACTGTAGCAGCTAATAGATTGG CTGCGGAGGACCTAAACTCAAAATTGGAAGAGATGAACCATGAATTGAGACTGAAAGGAGACAAAATTAATAGTTTAATGACCACTCAAGAGAACTTGGC GAAAGAAAAGAGTGACCACCAATCGAGAAGCAATGATTTTGCTAACAGATTGGCCATATCACTCCAAGAGATTAAAAACCTAGAAGGTTTTCTTCATGTA CTGGCTGCACAATTGGTTGAGTTGGATAAACAAAGTTTGACTTTTACCACCAAGTTTGATCAGCTAAACTCTCTCTATGATAGTTGCTTTAAGTTGGCCC AACAGGAGAGAGAACTTGCTGTGAAGCATGTCCAAAGGCAGTATGATCAGCTCCATGACCAGTCTTTGTCTGTAAAGTCAGAAAGAGACGCCATGAAATT GGTAAACCAGGAGTTAAATGATAAGATCATTGAACTTCAGAAATCCCAAGAGTCTATTATGGCACAGCTTTCAGAAGAATGTCAGTCAGCAAAAGAAAGA ATTCAAAGTTTGGAGTCTGAAGCTGAAATGCTGATGTCAAAGAAGAAGGAAACGGAGATGTTGGTTTCAAAATTAGAGGAGAAAATTGACACCTTGTCAG AAGGATCGAGGTCATCTGAGAATAAAATGCAAGATTTGTTGTTGAAAATTTCAGCATTAGAAATTGAAAACAAAGACAATGCAGAGAGGTTACAGGATGA AATACAGAGAAAAGAAGAAGAAATAGATTCTTTGCGAAAGGAAAGTGAGAAACATGAGCAACAGCTAAATTCATTGGAGAAACAGGTTTGCCAGCTCCAT AGTGTCTTAGAGGAGAAGGAACAGCTTATTGTTCAATATAAGGAAAGAGAAAAGAAGTTGGAAGATCAAATCACTGAGAATCAGGCATCGTTGACTGCTG CTGAAAGCAAACTTACGAAAGCAAAGAAGCAGCATGATATGCTGCTGGAGAGCAAACAATTGGAGCTATCAAGACATTTGAAAGAAATATCTCAGAGAAA TGATGAGGCTATTAATGACATTCGGAAGAAGTATGAAATGGAAAAGCTAGAGATTGTGAACATGGAAAAAGAAAAGGCAGACAAAATCGTATTAGAAATG GAAAGAAAATGCGACCAAAAGCTTGTCCAATGCAAAGAAGAATCAAGGAGGCAGATGATGTGCGTTCAGGGGGACCATGCAGCTCTGGTCTTAGGCATTC AGCAGGAGCGTGATAGAAAGGAGATCAGTCTTAAAGCTGCTCACAGTGAAGAACTAAAGTGTGCCCAACTTCAAGCTGAAAATGAACTGAGAGAGAAAAT AATAGAATTCGGGAATGAACATGAAGTTCAAATGAAAGCTTTGAGGTGCCAGCATGAAGATGAGTGCGGGAAGCTTCAGGAGGAGCTGGATCTCCAAAAG TCAAAGGAAGACAGGCAGAGGGCTTTGTTGCATTTGCAGTGGAAAGTGATGAGTGACAAGCCACAAGAAGACCCAGAAGTGAATTCGAAAAAGAAGGAAT ATTCTGTTTCATCTGTTAAGATGAGAGGTCCGGGTGGTGCTAAAAGAAGCCACAATTCTCTGGGAAGTTTACAGAATGAAAAGAAGGTAACTCACCATGA ATATGAAGTTGAAACCAACAATGGACGAACAATCACTAAACGCAGAAAGACAAAAAGTACAGTCATGTTTGAGGACCCAAGAAAACATGAGAGGACAAGG ACAAATACTCCAAAGGCCAGAACTCCAAGAAGTGTTGCCAAGGGACTTAAGGGAGGGGATCAGTCACATCCATCAACCATTGGCGATTTGTTTTTGGAAG GGTCTCTGAATCCTTATGCAGATGATCCATATGCATTTGGTTAG
AA sequence Show only first row Show all	>Potri.002G096400.1 pacid=42777746 polypeptide=Potri.002G096400.1.p locus=Potri.002G096400 ID=Potri.002G096400.1.v4.1 annot-version=v4.1 MQSVIDFEMQKLGFPSMKTFDQFKSLSGSAKNFSFNSRSSTDSTTSGSFANLKITAEKLVKEQASVKTDLGMANTKLKKSMEHIHVLEDKLQNAFNENAK LKVKQKEDEKLWKGLESKFSSTKTLCDQLTETLQHLAGQVQDAEKDKEFFEGKLSASSNGIDYLNQQLNDLSVKLGSAEETIRTRERELQELEINKEERN KIYIEELRQTTSLIEEKDAMLKKFETTVAANRLAAEDLNSKLEEMNHELRLKGDKINSLMTTQENLAKEKSDHQSRSNDFANRLAISLQEIKNLEGFLHV LAAQLVELDKQSLTFTTKFDQLNSLYDSCFKLAQQERELAVKHVQRQYDQLHDQSLSVKSERDAMKLVNQELNDKIIELQKSQESIMAQLSEECQSAKER IQSLESEAEMLMSKKKETEMLVSKLEEKIDTLSEGSRSSENKMQDLLLKISALEIENKDNAERLQDEIQRKEEEIDSLRKESEKHEQQLNSLEKQVCQLH SVLEEKEQLIVQYKEREKKLEDQITENQASLTAAESKLTKAKKQHDMLLESKQLELSRHLKEISQRNDEAINDIRKKYEMEKLEIVNMEKEKADKIVLEM ERKCDQKLVQCKEESRRQMMCVQGDHAALVLGIQQERDRKEISLKAAHSEELKCAQLQAENELREKIIEFGNEHEVQMKALRCQHEDECGKLQEELDLQK SKEDRQRALLHLQWKVMSDKPQEDPEVNSKKKEYSVSSVKMRGPGGAKRSHNSLGSLQNEKKVTHHEYEVETNNGRTITKRRKTKSTVMFEDPRKHERTR TNTPKARTPRSVAKGLKGGDQSHPSTIGDLFLEGSLNPYADDPYAFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Potri.002G096400 [exp]	0	1
AT2G23140			RING/U-box superfamily protein...		Potri.005G144700 [exp]	1.41	0.8321
					Potri.009G163001 [exp]	1.73	0.8295
AT3G63340			Protein phosphatase 2C family ...		Potri.005G214650 [exp]	4.47	0.8190
AT5G63520			unknown protein		Potri.015G098800 [exp]	5.47	0.7939
AT1G06340			Plant Tudor-like protein (.1)		Potri.009G151200 [exp]	5.47	0.7174
AT1G76280			Tetratricopeptide repeat (TPR)...		Potri.001G047200 [exp]	7.93	0.7362
AT4G14096			F-box/RNI-like superfamily pro...		Potri.013G151700 [exp]	11.66	0.7065
AT3G08960			ARM repeat superfamily protein...		Potri.016G119900 [exp]	25.37	0.6890
AT5G16890			Exostosin family protein (.1)		Potri.019G049800 [exp]	32.61	0.6541
AT2G46310	AP2_ERF	CRF5	cytokinin response factor 5 (....		Potri.014G094500 [exp]	32.93	0.7635

Compare expression of checked genes

Potri.002G096400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.