Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34630 666 / 0 unknown protein AT5G51150 125 / 5e-31 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G111200 [exp] 134 / 4e-34 AT5G51150 767 / 0.0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.012G113700 [exp] 125 / 9e-31 AT5G51150 744 / 0.0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.005G165100 [exp] 108 / 1e-28 AT1G34630 92 / 1e-23 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034188 [exp] 718 / 0 AT1G34630 681 / 0.0 unknown protein Lus10043395 [exp] 392 / 6e-134 AT1G34630 374 / 2e-128 unknown protein Lus10043005 [exp] 106 / 4e-24 AT5G51150 780 / 0.0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Lus10032508 [exp] 103 / 3e-23 AT5G51150 775 / 0.0 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G096500.1 pacid=42778071 polypeptide=Potri.002G096500.1.p locus=Potri.002G096500 ID=Potri.002G096500.1.v4.1 annot-version=v4.1 ATGTCGCCATCAGGCGACGGAGCCACCGAAGTTAAAATCTGCTCCGACGAAAATGGTGGCTTCCATGGCGGCTATATAAAAACACATTGCTTGAAATCGG AGCCTCCTTTCTGCTCTTCTTCTTATTTACCAGGAATTGCCTTAAATCCGTTTCAGGACTCGGAGAAACTAGCGCGAGTTGTTACTGCGTCAGCAAAAGG TTTCTCAATTGGAGCCGGTATTAAAGGAGGACTCGCCTTGTTTTCAATTCTCGCAAGGTTGCGGCGCACCAGATTATCCTCCACGAGGAAAGTCGAGGTG TTTTCCAACAGGAAAGCTATTGATTTAGCTATTAAGGAAACGCTAAGATACGGGCTTTTCCTTGGTACTTTTGCTGGTACATTTGTGTCTGTTGATGAAA TTATTGCATATTTAGGAGGCCACCGGAGGACGGCGAAATGGAGGTCTTTATTAGCAGGATTAATCGCTGGGCCATCTATGCTTCTTACAGGGCCAAACAC ACAGCACACAAGCTTGGCCATATACATACTTATGCGTGCTGCAGTGTTAGCGTCACGGTGTGGAATTAAGAGCAAACGATTTGGGAAAATTTGTAAACCT CTTACTTGGAAGCATGGAGACGTTTTCCTCATGTGTCTCTCGTCTTCTCAAGTTTTGTCTGCTTATATATTGAAGCAAGATAGTTTGCCTCCATCATACA AGTCCTTTCTCAATAAACACGGTGGAAAGGATCTTTCTATCTTGCAAGGTGTGAAAGATATTGCAAGCGGCTTGCCTTTCACAAATTTGGAGGCTATAGA GAAATATTACAACTCCACAGGTGTTGATATTAAGCTAGACCCAGAAATGAAAATCCCCTGCACGATTATACATGGAAATCAATCGTGCAGTGCGCATGTT GTTTCTTTTTTTCTTCAAGCATATAAAAGAGCTTTACCAGTTTATCTTCCTGTATATTTGATCCCTGCACTTATAGTTCATCGTCAAGGCCTCCTGAAAA GGCCTTGCAACATATTTGGGAAGGGTCTTCTTGGTACTGCAAGATCAAGCTTGTTTCTATCTGTGTATTGTTCATCTGCCTGGATGTGGACGTGTCTGCT CTTTAGAATTTTCAGGTGGTGTAACATTCCGATGGTGGCAATAGGGACGTTGCCAACTGGCCTGGCCCTAGCTATTGAAAAGAAAAGCAGGCGGATTGAA ATATCTCTTTACTGTTTCGCAAGGGCAGTTGAAAGCTTCTTTATCTGCACGCGAGATGCCGGATATTTGCCAGAGTCTCTGAATTTGAAGAGAGCTGATG TGGTGATTTTCAGCATCTCAACAGCTATAATAATGCATTGCTATGAGCAGGAAAGGGAAGTGTTCCGGTCCAAGTACCTTAATGTTCTTGATTGGGTATT TGGCGTGCCTCGCCCCCCTGGTGACACATCACCCCGCAAGGATGGGTTGAAAGCAAGCTGA
AA sequence Show only first row Show all	>Potri.002G096500.1 pacid=42778071 polypeptide=Potri.002G096500.1.p locus=Potri.002G096500 ID=Potri.002G096500.1.v4.1 annot-version=v4.1 MSPSGDGATEVKICSDENGGFHGGYIKTHCLKSEPPFCSSSYLPGIALNPFQDSEKLARVVTASAKGFSIGAGIKGGLALFSILARLRRTRLSSTRKVEV FSNRKAIDLAIKETLRYGLFLGTFAGTFVSVDEIIAYLGGHRRTAKWRSLLAGLIAGPSMLLTGPNTQHTSLAIYILMRAAVLASRCGIKSKRFGKICKP LTWKHGDVFLMCLSSSQVLSAYILKQDSLPPSYKSFLNKHGGKDLSILQGVKDIASGLPFTNLEAIEKYYNSTGVDIKLDPEMKIPCTIIHGNQSCSAHV VSFFLQAYKRALPVYLPVYLIPALIVHRQGLLKRPCNIFGKGLLGTARSSLFLSVYCSSAWMWTCLLFRIFRWCNIPMVAIGTLPTGLALAIEKKSRRIE ISLYCFARAVESFFICTRDAGYLPESLNLKRADVVIFSISTAIIMHCYEQEREVFRSKYLNVLDWVFGVPRPPGDTSPRKDGLKAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34630			unknown protein		Potri.002G096500 [exp]	0	1
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Potri.014G100700 [exp]	1.73	0.7852
AT5G67350			unknown protein		Potri.007G051800 [exp]	3.87	0.7288
AT3G15690			Single hybrid motif superfamil...		Potri.001G172600 [exp]	7.34	0.7350
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Potri.001G403900 [exp]	19.79	0.6762
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Potri.007G023400 [exp]	23.55	0.6970
AT2G28410			unknown protein		Potri.009G013800 [exp]	36.60	0.6832
AT5G62200			Embryo-specific protein 3, (AT...		Potri.001G193500 [exp]	39.00	0.6490
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Potri.010G087900 [exp]	40.49	0.6484
AT5G38360			alpha/beta-Hydrolases superfam...		Potri.004G099300 [exp]	46.19	0.6646
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.007G007600 [exp]	48.98	0.6674

Compare expression of checked genes

Potri.002G096500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.