Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CRY1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08920 1017 / 0 OOP2, HY4, BLU1, CRY1, ATCRY1 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) AT1G04400 627 / 0 FHA, AT-PHH1, CRY2, ATCRY2 cryptochrome 2 (.1.2) AT3G15620 157 / 1e-40 UVR3 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) AT5G24850 107 / 2e-24 CRY3 cryptochrome 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G164700 [exp] 1261 / 0 AT4G08920 999 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Potri.010G071200 [exp] 663 / 0 AT1G04400 799 / 0.0 cryptochrome 2 (.1.2) Potri.008G166632 [exp] 224 / 2e-69 AT1G04400 249 / 5e-80 cryptochrome 2 (.1.2) Potri.003G060000 [exp] 162 / 1e-42 AT3G15620 908 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Potri.006G277500 [exp] 108 / 2e-24 AT5G24850 781 / 0.0 cryptochrome 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033446 [exp] 1085 / 0 AT4G08920 1009 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10020930 [exp] 912 / 0 AT4G08920 899 / 0.0 OUT OF PHASE 2, ELONGATED HYPOCOTYL 4, BLUE LIGHT UNINHIBITED 1, cryptochrome 1 (.1) Lus10011822 [exp] 645 / 0 AT1G04400 781 / 0.0 cryptochrome 2 (.1.2) Lus10021188 [exp] 625 / 0 AT1G04400 747 / 0.0 cryptochrome 2 (.1.2) Lus10022095 [exp] 110 / 4e-25 AT3G15620 725 / 0.0 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2) Lus10020878 [exp] 108 / 2e-24 AT5G24850 732 / 0.0 cryptochrome 3 (.1) Lus10033499 [exp] 102 / 3e-23 AT5G24850 440 / 4e-153 cryptochrome 3 (.1) Lus10000521 [exp] 56 / 3e-08 AT3G15620 295 / 7e-98 UV REPAIR DEFECTIVE 3, DNA photolyase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00875 [poplar] [flax] DNA_photolyase DNA photolyase CL0039 [poplar] [flax] PF03441 [poplar] [flax] FAD_binding_7 FAD binding domain of DNA photolyase CL0039 [poplar] [flax] PF12546 [poplar] [flax] Cryptochrome_C Blue/Ultraviolet sensing protein C terminal
Representative CDS sequence Show only first row Show all	>Potri.002G096900.2 pacid=42779089 polypeptide=Potri.002G096900.2.p locus=Potri.002G096900 ID=Potri.002G096900.2.v4.1 annot-version=v4.1 ATGTCAGGTGGTGGCTGTAGTATAGTTTGGTTCAGGAGAGATCTAAGGGTAGAAGATAACCCAGCACTTGCAGCTGGTGTAAGAGCAGGTGCGGTTGTTG CAGTGTTTGTATGGGCACCTGAAGAGGAAGGCCATTATTATCCTGGTAGGGTCTCAAGGTGGTGGCTTAAACAAAGTTTGGCTCATCTTGACTCTTCTTT AAGGAGTCTTGGTACTTCTCTTGTTACTAAGAGATCAACCGATAGTGTTTCTACTCTTCTTGAGGTTATCAAATCTACTGGGGCTACTCAGCTCTTCTTC AACCACTTATATGATCCCCTGTCGCTGGTTAGGGATCATCGGGCAAAGGAGGTTTTGACTGCTCAAGGTATTGCTGTAAGATCTTTTAATGCAGATTTAC TTTATGAACCATGGGATGTTAACGATGCCCAAGGCCGTCCCTTCACAACCTTTGCTACTTTCTGGGATAGATGCCTCAGCATGCCTTTTGATCCAGAGGC TCCACTTCTCCCGCCTAAGAGGATTATTTCGGGTGATGCATCTAGATGCCCTTCAGAGATGCTGGTATTTGAAGATGAATTGGAGAAAGGAAGCAATGCA CTTCTTGCCAGAGCATGGTCACCTGGATGGAGCAATGCTGATAGGGCTCTGACCACTTTCATTAATGGACCATTAATTGAGTACTCTAAGAATCGTAGGA AGGCTGATAGCGCTACAACCTCATTTCTCTCTCCGCACTTGCATTTTGGGGAGGTGAGTGTGAGAAAAGTCTTCCATCTTGTTCGCATAAAGCAGGTTCT GTGGGCAAATGAAGGGAACAAGGCTGGAGAAGAGAGTGTAAACTTGTTTCTCAAGTCAATTGGTCTTAGGGAATATTCAAGATACTTGAGTTTCAACCAT CCTTACAGTCATGAAAGGCCTCTTCTTGGGCACCTTAAGTTCTTCCCTTGGGTCGTGGACGGAGGCTATTTTAAGGCATGGAGACAAGGTAGAACAGGTT ATCCATTAGTTGATGCTGGGATGAGAGAATTGTGGGCCACCGGTTGGCTGCATGATCGTATACGTGTGGTTGTTGCGAGTTTCTTTGTGAAGGTTCTACA ACTTCCATGGAGATGGGGAATGAAGTATTTTTGGGATACCCTATTGGATGCAGATTTAGAGAGTGATGCTCTTGGTTGGCAATACATAACCGGCACTCTC CCAGATGGCCGGGAGTTTGATCGCATAGATAATCCACAGTTTGAGGGTTACAAATTTGACCCAAATGGAGAATATGTACGCCGGTGGCTTCCTGAACTTG CTAGGCTACCAACTGAATGGATACACCACCCATGGAATGCACCTGAATCTGTACTTCAAGCTGCTGGTATTGAGCTGGGATCAAATTATCCTCTCCCTAT TGTAGGGATAGATGCAGCAAAGGTCAGGTTGGAAGAAGCACTTTCAGAAATGTGGCAGCAAGAAGCTGCTTCAAGAGCTGCAATTGAGAATGGAACTGAG GAAGGGCTTGGAGACTCTTCTGAATCAGCTCCAATTGCCTTCCCTCAAGACATAAATATGGAGGAAAACCATGAGCCTGTGAGAAACAATCCTCCTGCTA CAAATCGCCGCTATGAGGATCAGATGGTCCCAAGCATGACCTCTTCTTTTCTGAGAATTGAAGACGAAGAAACTTCTTCAGATGTTCGCAATTCTACAGG AGATGGCAGAGCAGAGGTACCAAGAGATGTAAATGTAAATCAACAACCAAGAAGAGACACTTTGAACCAGGGGTTTGTGCAAAGTGTTCATAATGACAAC AGTTTGCCACCATTTAACGTTGTGAGAGGTCTGGCAAATGTTGAAGACTCAACAGCAGAATCTTCGAGCAGTAGTAGGAGAGAGAGGGATGGAGGTATAG TTCCAGTTTGGTCCCCTCCAGCTTCTAGTTACTCAGAGCAGTTTGTTGGTGATGAAAATGGAATTGGGGCAACTTCTTCTTACTTGCCGAGGCATCCACA ATCTCACCAGATACTCAATTGGAGGCGGCTACCCCAAACCGGGTAA
AA sequence Show only first row Show all	>Potri.002G096900.2 pacid=42779089 polypeptide=Potri.002G096900.2.p locus=Potri.002G096900 ID=Potri.002G096900.2.v4.1 annot-version=v4.1 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRSTDSVSTLLEVIKSTGATQLFF NHLYDPLSLVRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDAQGRPFTTFATFWDRCLSMPFDPEAPLLPPKRIISGDASRCPSEMLVFEDELEKGSNA LLARAWSPGWSNADRALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNH PYSHERPLLGHLKFFPWVVDGGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTL PDGREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQQEAASRAAIENGTE EGLGDSSESAPIAFPQDINMEENHEPVRNNPPATNRRYEDQMVPSMTSSFLRIEDEETSSDVRNSTGDGRAEVPRDVNVNQQPRRDTLNQGFVQSVHNDN SLPPFNVVRGLANVEDSTAESSSSSRRERDGGIVPVWSPPASSYSEQFVGDENGIGATSSYLPRHPQSHQILNWRRLPQTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Potri.002G096900 [exp]	0	1	CRY1.2
AT1G70100			unknown protein		Potri.010G038100 [exp]	5.19	0.8674
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.007G116550 [exp]	10.48	0.8585
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Potri.013G086800 [exp]	13.03	0.8486
AT3G15354		SPA3	SPA1-related 3 (.1)		Potri.001G399600 [exp]	46.76	0.8545	Pt-SPA3.1
AT2G15695			Protein of unknown function DU...		Potri.004G142000 [exp]	51.91	0.8285
AT1G02630			Nucleoside transporter family ...		Potri.006G068100 [exp]	55.09	0.8347
AT2G36950			Heavy metal transport/detoxifi...		Potri.016G093100 [exp]	65.49	0.8490
AT1G27680		APL2	ADPGLC-PPase large subunit (.1...		Potri.005G229700 [exp]	72.73	0.7987
AT5G19210			P-loop containing nucleoside t...		Potri.010G092200 [exp]	79.65	0.7979
AT5G24470		APRR5	pseudo-response regulator 5 (....		Potri.002G179800 [exp]	86.38	0.8435

Compare expression of checked genes

Potri.002G096900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.