Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37820 228 / 5e-74 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) AT4G18910 228 / 5e-74 ATNLM2, NIP1;2, NLM2 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) AT4G19030 228 / 7e-74 ATNLM1, AT-NLM1, NLM1, NIP1;1 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) AT5G37810 227 / 1e-73 NIP4;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) AT1G31885 219 / 3e-70 NIP3;1 NOD26-like intrinsic protein 3;1 (.1) AT2G34390 212 / 1e-67 NIP2;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 2;1 (.1) AT1G80760 185 / 5e-57 NLM7, NIP6;1 NOD26-like intrinsic protein 6;1 (.1) AT4G10380 182 / 9e-56 AtNIP5;1, NIP5;1, NLM6, NLM8 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) AT3G06100 141 / 2e-40 NIP7;1, NLM8, NLM6 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) AT2G25810 116 / 3e-31 TIP4;1 tonoplast intrinsic protein 4;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G072100 [exp] 235 / 8e-77 AT4G18910 406 / 3e-144 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.004G063000 [exp] 234 / 1e-76 AT4G18910 386 / 4e-136 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.010G112900 [exp] 213 / 1e-68 AT5G37810 332 / 2e-115 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Potri.017G128200 [exp] 211 / 2e-67 AT5G37820 350 / 3e-122 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Potri.001G046800 [exp] 194 / 2e-60 AT1G80760 371 / 1e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.017G083300 [exp] 189 / 1e-58 AT4G18910 229 / 2e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.003G180900 [exp] 188 / 2e-58 AT1G80760 370 / 2e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.001G455000 [exp] 180 / 3e-55 AT4G10380 447 / 7e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.011G146900 [exp] 176 / 1e-53 AT4G10380 450 / 4e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020929 [exp] 337 / 1e-116 AT4G19030 219 / 6e-70 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) Lus10035918 [exp] 241 / 7e-79 AT5G37820 206 / 2e-65 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Lus10025744 [exp] 240 / 2e-78 AT5G37820 207 / 6e-66 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Lus10029274 [exp] 227 / 1e-73 AT4G18910 382 / 6e-135 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10035999 [exp] 213 / 2e-68 AT5G37810 343 / 9e-120 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Lus10033447 [exp] 207 / 1e-66 AT1G31885 140 / 3e-40 NOD26-like intrinsic protein 3;1 (.1) Lus10024066 [exp] 189 / 2e-58 AT1G80760 416 / 2e-147 NOD26-like intrinsic protein 6;1 (.1) Lus10007322 [exp] 178 / 5e-56 AT4G18910 276 / 2e-94 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10010153 [exp] 180 / 7e-55 AT4G10380 450 / 6e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10017358 [exp] 176 / 1e-53 AT4G10380 446 / 2e-159 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [poplar] [flax] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Potri.002G097000.1 pacid=42777071 polypeptide=Potri.002G097000.1.p locus=Potri.002G097000 ID=Potri.002G097000.1.v4.1 annot-version=v4.1 ATGTCTAGCTCAAATTCGATTACTGAGCCCTCCCCTAAGTTCCAGCTGCCTACTAGACGCTCAATCATGGCAGAAGCAAAGGCAGCAAGTCCTGCCCCAG AATGGTTGTCTACCCGTAATGCTGCCCTGTCTAATTTCCAGAAGATTGTTGCAGAGTTGATGGGGACGTACATTCTTGTATTTGTGGGCTGTGGAGCTGC TCTCACTGACAAAGTTCAAAGACTAAATATGTTAGGAATAGCAATTGTGTGGGGCGCAGTTCTGATGGCAGCTATTTATGCTCTTGGTCATGTCTCCGGT GCACATTTTAATCCTGCAGTTAGCATTGCCTTGGCTGTTGTCCGCAAATTTTCTTGGAAAGAAGTACCGATGTACATTTTGGCTCAGGTCCTCGGATCAA CACTTGCAAGTCTAACTCTTAGGATGCTGTTCCATGAGCAAGGAAATATTCAACCCATAGTGAATCAGTACTCAGATCCAACTAGTGATCTTGAAGCAAT TGTGTGGGAATTTATAATTACATTTATCTTGATGTTCACCATTTGCGGCGTCGCTACCGATCCTCGAGCGAGCAAAGACCTTTCTGGAGTTGCAATAGGA GGTGCAGTAATGTTCAACGCCATGATTGCTGGGCCAATCACTGGAGCTTCGATGAACCCTGCAAGAAGTTTAGGCCCTGCTCTTGTCTCTGGTGTTTACA AGAATCTCTGGGTCTATATTGTATCCCCAATTCTCGGAGCAATGGCTGCAGCCGCAGTGTACTCTGTACTTCGGGTACCCGAGCCTGCTAAACCAGAGGA TACAAATAAATCCACATACAATAATCTTAACTTGCATGCTGATCCATAG
AA sequence Show only first row Show all	>Potri.002G097000.1 pacid=42777071 polypeptide=Potri.002G097000.1.p locus=Potri.002G097000 ID=Potri.002G097000.1.v4.1 annot-version=v4.1 MSSSNSITEPSPKFQLPTRRSIMAEAKAASPAPEWLSTRNAALSNFQKIVAELMGTYILVFVGCGAALTDKVQRLNMLGIAIVWGAVLMAAIYALGHVSG AHFNPAVSIALAVVRKFSWKEVPMYILAQVLGSTLASLTLRMLFHEQGNIQPIVNQYSDPTSDLEAIVWEFIITFILMFTICGVATDPRASKDLSGVAIG GAVMFNAMIAGPITGASMNPARSLGPALVSGVYKNLWVYIVSPILGAMAAAAVYSVLRVPEPAKPEDTNKSTYNNLNLHADP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Potri.002G097000 [exp]	0	1
					Potri.001G297101 [exp]	4.47	0.9464
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Potri.005G104900 [exp]	6.70	0.9437
					Potri.009G097500 [exp]	6.78	0.9024
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.003G118800 [exp]	18.16	0.9031
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Potri.011G162200 [exp]	19.79	0.9378	GER2.33
AT4G14750		IQD19	IQ-domain 19 (.1)		Potri.013G038901 [exp]	28.89	0.9340
AT3G17675			Cupredoxin superfamily protein...		Potri.013G030450 [exp]	29.22	0.9323
					Potri.005G061780 [exp]	34.46	0.9273
AT2G38010			Neutral/alkaline non-lysosomal...		Potri.002G013300 [exp]	34.89	0.9334
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Potri.005G163000 [exp]	47.49	0.9218

Compare expression of checked genes

Potri.002G097000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.