Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22310 105 / 1e-23 ATMBD8, MBD8 methyl-CPG-binding domain 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G164100 [exp] 1330 / 0 AT1G22310 100 / 6e-22 methyl-CPG-binding domain 8 (.1.2) Potri.001G312900 [exp] 207 / 7e-55 AT1G22310 110 / 1e-25 methyl-CPG-binding domain 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035631 [exp] 188 / 6e-49 AT1G22310 139 / 4e-35 methyl-CPG-binding domain 8 (.1.2) Lus10010764 [exp] 178 / 5e-45 AT1G02170 216 / 5e-62 LSD ONE LIKE 3, ARABIDOPSIS THALIANA METACASPASE 1B, metacaspase 1b, ARABIDOPSIS THALIANA METACASPASE 1, metacaspase 1 (.1) Lus10033445 [exp] 87 / 1e-18 AT1G22310 79 / 9e-17 methyl-CPG-binding domain 8 (.1.2) Lus10020931 [exp] 81 / 3e-16 AT1G22310 78 / 3e-16 methyl-CPG-binding domain 8 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G097700.15 pacid=42777453 polypeptide=Potri.002G097700.15.p locus=Potri.002G097700 ID=Potri.002G097700.15.v4.1 annot-version=v4.1 ATGGCCACTGCCACCGTGGACTCATCCATCTGCGACCTCCAGAATCATCTACACATCGAATCTCTCCCTCTAATCGACCTCCGCCATCTTTCCCAATCCG AACTCCTCTCCCTCTCCTTCTGTTCCTCCTCTCCCCACCGTCTACGAACCGACACCGCTGACGTATCCACTCCTAAAATCGACCGTTCCGTCTTCAATGA ATCTGCTGGAAGCCGCAAACAAACTTTCTCCCGCCTCCGCCTCGCCCCTCGCAATAACAATGCTTCCCCTTCTTCGAATTCAACTCCTGTTGTTCCCTTC CAAAATACAGAACGGCAGCCTCTCGATGAAGAGAATTCACAGATAATTTCTCTTCTGAAGTCGTTGTTTGGCTCTGATTCTAACTCAATCGAAAACAAGA ATGAGCATTATCACAAACTAGTCTCCATTCCTGTTATCTACAATGATTATATGCGTCTGCCTTCAACAAATAATGCGGAATCGCAAAATGTTTCAATCGA CATTTGGGATTCTAGTCAAGGAGGACTGAAAAGATTAGAGGTAAATCATTCGATTTCGATTCGAACTGCTGAATCTAGTTCAAAGAAGAGGAAGCGAGGC AGGCCACGGAAGAATGAGAATGTCAATTTCGATAATAACGATAATAGCGAGTTAGTTGAGAATAAGACTATTGCTGTTGTGTGTGACAATGTGGAAGTGG AGAGTAAGAAGAAAGAGGAGATGGTGATGGTAAATAAGAATGGAGTGGTGGTGGACTTTGGGGCATTGGGGAATATGGAGGATCCATACGGGGAGGAGTT GCGGAGGAGGACTGAGGGAATGCAATTGAAGGCAGAGTTTTTAGGGTTTTTGGAAGGGTTCGAGGGTGAATGGGGTAGTATGAGAAAGAAGAGGAGGATT GTGGATGCTAGCCTGTTTGGGGATGTGTTGCCGATTGGGTGGAAGCTCTCTATTTGCATCAAGAAACAAGCCGGTCGTGTTTGGCTGGCTTGTACAAGAT ACATAAGCCCTAATGGGCAGCAGTTTGTGTCCTGCAAGGAAGTTTCATCGTATTTGCTCTCCTTTTCCGGACTGCATGATGTAAGCCGGTTGAATTTTGG TCACATGGATGGCAGGATTAAGTTGACCGACAAGATATCTCCTTCCATTCCTGCAGATCATACACGTAAAGATGGCAAGAATGAGAATGATTTTATTAGC TATATGGCATTGCCTGTTACCTGTAGATCTATTGAGATGGGGGGATGTCCTGTGGAGGTTCAAATGGGGAATAAGTATAAGTGCCACAAGTGCACCGTGG CTTTTGATAAGCAGGATGACTTGCTTCAACACCTGCTATCTCATCAGCGGGCTCCAAAACAGCTTAGATTTGGGACATCCACAAATGAAGAGGTGATCAT AAAAAATGGAAAGTACGAATGTCAATTTTGTCACAAACTTTTTGAAGAAAGGCATCGTTTCAATGGTCACCTTGGGAACCACATAAAAGAATATCTTAAG AGACTTGATGCTTCCAATGGCAAAACCACTGGAGAGAGCGATGAACCTGCATTGGTCAAAATTCCTCCTGGAGCTGGAAAGATCCAAACATTGATTGAAT TTGACAGGGATTCTGATGCAATAACTGTTAACACTAAAATCAGTGATGAAATAAACTCCACCATTCCATATTGTGAATTAAAGGCTATTACTTCTGTAGA AACCCATTGTGGCGAGCAGGACAGAGTTTTTATTAGCAGCAATGATGGAGCGGGGAAGATGAATGAAGATACTGATGCTGTGGCAGCTGAAAATAGAGTT TCTTCTGAACCAGCCTTGTTGAATAATGATATTCATAGATCTTCTGATGAAACAGATGTTCCCAAGTGCCCCACCAATGGCACCAGTGATCTTGGTAGGA AGGATAAAAGCTTTAAAAACTGTTCAGTTGCTGGTGGAGCAAGGGACGTGACTTGTATTGGTCACAACAATTCAAATCATGTATCTCCTTGCTTAATTGA GGAACTCAATCAGGAGAGAGATTCTAATTGTGGTTTGCTTGCATCAAATGCTAAGGTGAACACATCTAATGATGACATTATTGAGGATAGACATTGTTCT AGTCCAATTGATAACATGGTAATTGATGGTTGGGGTATAGATGGAAAAGGTGAGCCAATAACTGGCTGTTGCAACAGTTATGCTGCAATGGGGGGGAATG CTGCTGTTAACTTGAGGGAGCAAACAATTTCTGAAGGCTGTTATGTTGCAGATAGTGAGACAGGTCTTTTTACTTTCAATGCAGTGGAAACCATGCTGGA AAAAGGTTCTAAAGGGGGTTTAACAGGTATTGAGAACAACATGAACAGTGTTTGTACTGGCATGTCAAATGAGAGCAGATTTGATGATGTGGTGAAGTCT GGGACTAATGAGATAACAATTGTTTGTTGTGGCGATAACACTGTACTGGCTGGTGATAATGTGACTAGCAATGAACAGGGGGGAAATCATGGGGCCGGCT CAGTTATTCCATTTTTGTTGAATCAGCATACACATCTTGTTGAAAATACTATCACAGGGGCTCCTAAATGCATACTAAGAGAACCCTGTCAAGGAAAGGA ATCCGAAGATTGCCCGATTACTACATCTGGTAATGAGCAATTATTCGACTTTGAAAGTAATGTAATTAAGGTTTCTAATGGCACAATAGATGTGGCCAAT CATGATCAGGTTGGCAGTGAGATTGATCTAGTCCCACAAACCTTAACTAGTATTAAGCAGGAAGAAATTTCTAAAACCCTTACATTTGCTCCATTTACAA ATGGATTTGCTTCAAAAGACTATGGTATCTCCAATAGTGTACTGGAGAAGCTTGAGCAGGGTAGAAATTCTGGACGCGGATCATCTGACAATGAGCAATC CCATGATGTAAAGGATATTGTGAATGGTTTATCATTCACCACAGTGGAGGAAGACAATCAACAGGAAGTTAAAATCTCTTGCAATGGTGAGCTACATATT GCTTCAGATGACAATTGCACTGAACAGGATGCAGATGTTGGGACAGGCACTGTGCAGAAATGTTCTCTTTTTGCTGGGAGTCAGCTCGCATTCACTGCCA AAGATAATCCCACTGGTCCCTACAGTGGTGCTGTGGATGAGCTGAAGCAGAAAATGGATTCTGTAGAGAGTGCGGTTTGTCCATCTGGCAGCGAGCCAGT GTGGAGCGTTGAAAAGAATTTGCAGACTGCTTTTACAGGTTCGGTTCAGGAGGAGCCTAGGGTAGAGAACTCAGAAAATCCTAGGAAGGATGATTCAGGG ATTGGTTTTAGCAGCCACCCTGGACCAGATGAAAGTGATGTCATATCTGAGTTTATGTGGAGAAACGATGAAGAAAGTAACCTGCTAAGTGATTTTGCTG ATACTTCATGTCAACCAGTACAAACATCAAGCTTTTTTCCTCCATATGATGCAGTGTCAGATAAGGGTGAAAGTGAACTTTTTGCAGAGAAATTTGGTGC TACATCAGGTTTTGAAGGGCTGAAATTGGGTGGCATGGATAATATGGAATGTAATCTTCCGACTTCTCAAGTAAGCTCACATTCAGATGAATCCAAGGTT GGTACATATGATGCTGTTATGCCTAAAGGGATTACTTCATCTATTTGGCTTGCAAAGGAAGATTTGCCTTTTGTGCCAAAAGATTCAAGCAGGCACCATG TTCCTGCTGTGTGTGTCTGGTGTGGGAGGGAGATTTGTCAGGAGGCTCTTGAATCTGAAGGACAAACAAGCACCATGGGTTTTATGTGTGCAGAGTGCAC TGCCAAGTTGTCCGGGCAATTCAACGGATAG
AA sequence Show only first row Show all	>Potri.002G097700.15 pacid=42777453 polypeptide=Potri.002G097700.15.p locus=Potri.002G097700 ID=Potri.002G097700.15.v4.1 annot-version=v4.1 MATATVDSSICDLQNHLHIESLPLIDLRHLSQSELLSLSFCSSSPHRLRTDTADVSTPKIDRSVFNESAGSRKQTFSRLRLAPRNNNASPSSNSTPVVPF QNTERQPLDEENSQIISLLKSLFGSDSNSIENKNEHYHKLVSIPVIYNDYMRLPSTNNAESQNVSIDIWDSSQGGLKRLEVNHSISIRTAESSSKKRKRG RPRKNENVNFDNNDNSELVENKTIAVVCDNVEVESKKKEEMVMVNKNGVVVDFGALGNMEDPYGEELRRRTEGMQLKAEFLGFLEGFEGEWGSMRKKRRI VDASLFGDVLPIGWKLSICIKKQAGRVWLACTRYISPNGQQFVSCKEVSSYLLSFSGLHDVSRLNFGHMDGRIKLTDKISPSIPADHTRKDGKNENDFIS YMALPVTCRSIEMGGCPVEVQMGNKYKCHKCTVAFDKQDDLLQHLLSHQRAPKQLRFGTSTNEEVIIKNGKYECQFCHKLFEERHRFNGHLGNHIKEYLK RLDASNGKTTGESDEPALVKIPPGAGKIQTLIEFDRDSDAITVNTKISDEINSTIPYCELKAITSVETHCGEQDRVFISSNDGAGKMNEDTDAVAAENRV SSEPALLNNDIHRSSDETDVPKCPTNGTSDLGRKDKSFKNCSVAGGARDVTCIGHNNSNHVSPCLIEELNQERDSNCGLLASNAKVNTSNDDIIEDRHCS SPIDNMVIDGWGIDGKGEPITGCCNSYAAMGGNAAVNLREQTISEGCYVADSETGLFTFNAVETMLEKGSKGGLTGIENNMNSVCTGMSNESRFDDVVKS GTNEITIVCCGDNTVLAGDNVTSNEQGGNHGAGSVIPFLLNQHTHLVENTITGAPKCILREPCQGKESEDCPITTSGNEQLFDFESNVIKVSNGTIDVAN HDQVGSEIDLVPQTLTSIKQEEISKTLTFAPFTNGFASKDYGISNSVLEKLEQGRNSGRGSSDNEQSHDVKDIVNGLSFTTVEEDNQQEVKISCNGELHI ASDDNCTEQDADVGTGTVQKCSLFAGSQLAFTAKDNPTGPYSGAVDELKQKMDSVESAVCPSGSEPVWSVEKNLQTAFTGSVQEEPRVENSENPRKDDSG IGFSSHPGPDESDVISEFMWRNDEESNLLSDFADTSCQPVQTSSFFPPYDAVSDKGESELFAEKFGATSGFEGLKLGGMDNMECNLPTSQVSSHSDESKV GTYDAVMPKGITSSIWLAKEDLPFVPKDSSRHHVPAVCVWCGREICQEALESEGQTSTMGFMCAECTAKLSGQFNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.002G097700 [exp]	0	1
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Potri.015G043200 [exp]	1.73	0.8406
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.015G066500 [exp]	2.00	0.8426
AT2G36240			pentatricopeptide (PPR) repeat...		Potri.006G068700 [exp]	2.00	0.8663
AT5G08630			DDT domain-containing protein ...		Potri.004G138900 [exp]	4.69	0.8176
AT1G05910			cell division cycle protein 48...		Potri.017G030900 [exp]	7.48	0.8403	BRD911
AT5G19900			PRLI-interacting factor, putat...		Potri.001G011800 [exp]	9.16	0.8320
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.003G110100 [exp]	12.32	0.8276
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Potri.001G029600 [exp]	12.84	0.8106
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Potri.001G193900 [exp]	13.07	0.7904
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Potri.013G006000 [exp]	13.41	0.8395	MOM.2,1

Compare expression of checked genes

Potri.002G097700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.