Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78230 523 / 5e-178 Outer arm dynein light chain 1 protein (.1) AT4G03260 265 / 6e-79 Outer arm dynein light chain 1 protein (.1.2) AT3G17920 63 / 7e-10 Outer arm dynein light chain 1 protein (.1.2) AT5G19680 60 / 2e-09 Leucine-rich repeat (LRR) family protein (.1) AT1G48540 61 / 3e-09 Outer arm dynein light chain 1 protein (.1.2) AT2G34680 59 / 1e-08 AIR9 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) AT1G61180 56 / 1e-07 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT5G22320 49 / 1e-05 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT5G45800 48 / 2e-05 MEE62 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) AT1G61310 47 / 5e-05 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G164000 [exp] 1092 / 0 AT1G78230 464 / 2e-155 Outer arm dynein light chain 1 protein (.1) Potri.019G119300 [exp] 269 / 2e-80 AT4G03260 549 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Potri.019G119500 [exp] 261 / 2e-77 AT4G03260 521 / 3e-177 Outer arm dynein light chain 1 protein (.1.2) Potri.013G150300 [exp] 222 / 4e-63 AT4G03260 504 / 2e-170 Outer arm dynein light chain 1 protein (.1.2) Potri.004G199200 [exp] 74 / 9e-14 AT5G22320 354 / 2e-118 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.012G045300 [exp] 70 / 4e-12 AT3G17920 917 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Potri.015G036300 [exp] 65 / 1e-10 AT1G48540 867 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Potri.011G090200 [exp] 61 / 2e-09 AT2G34680 1307 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.001G357700 [exp] 57 / 4e-08 AT2G34680 2236 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020932 [exp] 528 / 1e-180 AT1G78230 448 / 1e-149 Outer arm dynein light chain 1 protein (.1) Lus10033444 [exp] 519 / 1e-177 AT1G78230 450 / 8e-151 Outer arm dynein light chain 1 protein (.1) Lus10018514 [exp] 262 / 1e-77 AT4G03260 509 / 1e-172 Outer arm dynein light chain 1 protein (.1.2) Lus10039729 [exp] 219 / 2e-62 AT4G03260 429 / 2e-142 Outer arm dynein light chain 1 protein (.1.2) Lus10017994 [exp] 66 / 9e-11 AT1G48540 685 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Lus10013308 [exp] 64 / 1e-10 AT5G22320 362 / 9e-122 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10005198 [exp] 59 / 6e-09 AT5G22320 318 / 9e-105 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10038534 [exp] 59 / 9e-09 AT2G34680 1378 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Lus10012715 [exp] 54 / 2e-07 AT5G19680 458 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10010891 [exp] 52 / 5e-07 AT5G19680 384 / 3e-135 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Potri.002G097800.1 pacid=42777310 polypeptide=Potri.002G097800.1.p locus=Potri.002G097800 ID=Potri.002G097800.1.v4.1 annot-version=v4.1 ATGAAATTCAACTGCTGTTCTGTTCTGATGGGGATGAAGAAGAAAGAGAAGATTGATAAGCAATCATCAAGAACAGCCGACTTTGACACGGCGCTTAAAA CCCTGAAAATCAAGCTTGAACATCCGGTGGAAACTTTTGAAAGCGATGAGTTGAAAACCACATCTTTTAGCGTGTCAGTACCTTTCGATGTTCAGAAGGA TTCAATCAATGTCCAGGTGCTGAGCCATGAGAGCCCTGTTGTGGATGAAGCAGCAGAAGTAGCTTATGAAGGAGAAGATGAGCAAGAAGAGAATGTTTCA TTGAAGAGGGACTTATCTGACTTTGATCTCCAATCCCATGCGGCCAATTCCGGTGAAGTATCTTTTCCAAGAAATGTGAAGCTGGATTCCTCTCATCCGC TTGACACCATGGGCAATGAACAATATGCAAAGAAAGCTGAGAAAAAAGTTGATGAAAAGGGTATTCATGTGATACAAAGTGGACATGTTAGCGATCCTGG CATCGGGAAGGCTGAGTTCTGGGGTTCGCCTAAGCTCAAACGGTCCTGTTCTAATCTGGAAACAAGCAAAGTGCTAAGGAAAATTGCTGCTCAGTTCCCT TTAACATCTCAGGATTCTGAAGAATTGCAGGGACTGGCTGAGAAAGTAAGAGATCCCAGCAGCCCGACATCTGTAATAAGCCGTCGCAGTGCTGACAGAG TGATGTTAAAGAAGCACTCTTCTAGCCAAGTTCTACCCTCTAGGAGTAGAAGGCTGTGGTGGAAATTGTTCCTCTGGAGCCACAGAAACCTTCACAAACC TTGGTTTGTAAAACCACTGCAACCGGCTGTAAGTAAACTTTTGAGCCAGCAAGGCGGTTATTCATCAGATACACTTGAACCCAACAGAGCCATGAGTAAA ATGCAATCACCTCGGTCATTCACAGTAAAGTCAATGGACAAGGGTCATAACAACAATGAAGAGGACAGTCAGAGCTGGAATAGCTTTCATGCTGGGATTT CTGGTCTGTGGCCCCAGAATCAATGGGTTGCTTTCTCAGTAGAATCATCCCCATTTTCAAGAGTGGATGAATGGGTCAAGGATCTTGAGACCCATCCCTC TCCTCTTGATGCTTATGATAATAACAATGATGTTAGGGGTGACGACGACATTGTCTTCCCACCCTCTCCCGATACCGGTAGATCACCAAGAAGAGCCATG ACACGCCCAGATTTTAATCTCTCAGTGGAGATTTTGCATGCCAATAGTGTGATCCAGTCGCTTAATTCTTCCTCAACTGTTGCCCACATCTCAGGCAATG GCTTAAAAGCTATTCCCACCACATCACGTTTCTCCAGTCTTCGATCTGTTAACTTGTCAAACAACTTCATAGTCCAAATTACACCAGGATCATTGCCAAA GGGCCTACACACACTCAACCTATCGAGAAACAAGATCAACACCATTGAAGGACTTAGAGAACTTACCCGATTGCGGGTACTCGATCTCAGTTACAATCGC ATTTCTCGAATTGGTCAAGGGTTGTCGAACTGTACAATAATCAAGGAACTCTATCTTGCTGGGAACAAGACTAGTGATGTTGAGGGGCTGCACAGGCTCC TGAAGCTTACAGTCTTGGACTTGAGCTTTAACAAGATAACAACAACAAAAGCTCTGGGCCAGCTTGTTGCGAACTACAACTCACTGCAAGCTCTGAATCT GTTGGGCAATCCAATTCAGAGCAACATCAGTGATGACCAGCTTCGCAAGGCAATTTGTGGCCTCCTCTCTAAGCTAGTGTATCTGAACAAGCAACCCATT AAACCTCAGAGAGCACGAGAAGTTCTCGCAGATAGCGTTGCCAGAGCCGCCCTTGGAACCAGCAGCAGCAGGAGCTATCGGAGAAAAGCAGTGAAGAGAG TGACCTCTAGCAGTTCAATCTCCAGTATGCAAAGGGGCAGCGTTGGGGGTGCGCAAAAAAGCAGGGACAGGTCAAAGAGCCGGACTCATCACCTAAAGAC AATGTCCTCTGCACATGCTTCTTCATCCCGTTAA
AA sequence Show only first row Show all	>Potri.002G097800.1 pacid=42777310 polypeptide=Potri.002G097800.1.p locus=Potri.002G097800 ID=Potri.002G097800.1.v4.1 annot-version=v4.1 MKFNCCSVLMGMKKKEKIDKQSSRTADFDTALKTLKIKLEHPVETFESDELKTTSFSVSVPFDVQKDSINVQVLSHESPVVDEAAEVAYEGEDEQEENVS LKRDLSDFDLQSHAANSGEVSFPRNVKLDSSHPLDTMGNEQYAKKAEKKVDEKGIHVIQSGHVSDPGIGKAEFWGSPKLKRSCSNLETSKVLRKIAAQFP LTSQDSEELQGLAEKVRDPSSPTSVISRRSADRVMLKKHSSSQVLPSRSRRLWWKLFLWSHRNLHKPWFVKPLQPAVSKLLSQQGGYSSDTLEPNRAMSK MQSPRSFTVKSMDKGHNNNEEDSQSWNSFHAGISGLWPQNQWVAFSVESSPFSRVDEWVKDLETHPSPLDAYDNNNDVRGDDDIVFPPSPDTGRSPRRAM TRPDFNLSVEILHANSVIQSLNSSSTVAHISGNGLKAIPTTSRFSSLRSVNLSNNFIVQITPGSLPKGLHTLNLSRNKINTIEGLRELTRLRVLDLSYNR ISRIGQGLSNCTIIKELYLAGNKTSDVEGLHRLLKLTVLDLSFNKITTTKALGQLVANYNSLQALNLLGNPIQSNISDDQLRKAICGLLSKLVYLNKQPI KPQRAREVLADSVARAALGTSSSRSYRRKAVKRVTSSSSISSMQRGSVGGAQKSRDRSKSRTHHLKTMSSAHASSSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78230			Outer arm dynein light chain 1...		Potri.002G097800 [exp]	0	1
AT1G79270		ECT8	evolutionarily conserved C-ter...		Potri.010G175500 [exp]	2.00	0.9043
AT1G29220			transcriptional regulator fami...		Potri.004G058700 [exp]	3.46	0.9047
AT3G61260			Remorin family protein (.1)		Potri.014G081300 [exp]	3.87	0.9026
AT2G17350			unknown protein		Potri.009G169200 [exp]	6.16	0.9075
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Potri.001G271700 [exp]	6.32	0.8816	MPK3.1
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.014G091800 [exp]	6.92	0.8969
AT2G40780			Nucleic acid-binding, OB-fold-...		Potri.019G061200 [exp]	8.06	0.8779
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.005G101400 [exp]	8.36	0.8958	HMGB915
AT5G55340			MBOAT (membrane bound O-acyl t...		Potri.008G145700 [exp]	10.39	0.8677
AT4G23010		ATUTR2, UTR2	UDP-galactose transporter 2 (....		Potri.001G111000 [exp]	12.48	0.8789

Compare expression of checked genes

Potri.002G097800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.