Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08940 492 / 3e-174 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 162 / 1e-44 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G21970 137 / 4e-36 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G62990 123 / 6e-31 EMB1692 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 113 / 1e-27 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 112 / 2e-27 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT3G58520 109 / 4e-26 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT1G79120 107 / 9e-26 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G63090 96 / 2e-21 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G39120 93 / 1e-20 WTF9 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G096800 [exp] 162 / 7e-45 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G169300 [exp] 162 / 1e-44 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 141 / 1e-37 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G233900 [exp] 127 / 3e-32 AT5G62990 498 / 6e-174 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 115 / 2e-28 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.005G191100 [exp] 110 / 2e-26 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.001G439100 [exp] 109 / 3e-26 AT1G79120 483 / 2e-170 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G230900 [exp] 105 / 7e-25 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G220000 [exp] 102 / 9e-24 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008711 [exp] 520 / 0 AT4G08940 538 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10005945 [exp] 160 / 4e-44 AT4G01037 582 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10029446 [exp] 159 / 1e-43 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10016529 [exp] 139 / 1e-36 AT5G21970 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10010567 [exp] 121 / 5e-30 AT5G62990 509 / 2e-178 embryo defective 1692, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10040797 [exp] 118 / 2e-29 AT5G21970 487 / 3e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000847 [exp] 116 / 6e-29 AT3G58520 501 / 1e-178 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10000098 [exp] 117 / 7e-29 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10015979 [exp] 115 / 4e-28 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10000096 [exp] 112 / 2e-27 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [poplar] [flax] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Potri.002G097900.1 pacid=42779155 polypeptide=Potri.002G097900.1.p locus=Potri.002G097900 ID=Potri.002G097900.1.v4.1 annot-version=v4.1 ATGGCTTGGCGCCTCCTCCTCTCCAAATCCACCTCCTCCAAAACCCTAACCTCTCCTCCCCTCCAAAACCCTACCCCTAACCCCCTTCTATCTCTCTTCT CCTCCCATTTCTCCACATCCTTTCTTGTCACCAAAACCCCAAAAAAACACAAGAAAAAACGCGAAAAACCAGAATCCCCACGCACCAGGCTCGTCCAGCA CCCCTCCACCCGGATTCCTCAATTTGAATCTCTCCTCGAACGCGACTCTTACTTTCGTTTCCTCACTAAATCCAAACAATTCCTCTCTCAACAACCAGAA CGCATTCTCCGCCTTGACGACGCTGGAAAGCTCCACCAAGAACTTGGTTTCCCTCGCGGCCGCAAAATCCACCGCTTCCTCCAACGCCACCCTCTCATTT TCCAAACTTATCGCCACACCGATAACAAATTGTGGGTCGGCTTTACAGATTTTATGGAGGAATTGCTGGAAGAAGAGAAGGAAATTATGGATTCAATGGA GAGTGATCGTGTTAATAAGGTGCGTAAGCTGTTGATGATGTCGAAGAATAAAAGGATTCCTTTGAGTAAAATTCATCATTGTCGGTTATTGCTTGGAATT CCTGATGATTTTAGAGATAGAGTCGCTAAATATCCTGATTACTTTAGAATTGTTGTTGAGGGTGATGGGAAGAGGATTTTAGAATTAGTGAATTGGGATC CGAGTTTGGCGGTGAGTAAATTGGAAAAGGAGTTTATGGTTAACGAGGAGAAGGCGAAAAGGGCGTTCAAGTTTCCGGTAAAGCATGGGAAGGATTTGGA TTTGGAGGTGGAGGATACGAGGAGGTTGAATTTATTGAATACATTGCCATTGGTTTCGCCGTATAGTGATGGAGAGAGATTGGAGTTATGGAGCTTAGAG GCGGAGAAGTATAGGGTAGGGATTTTGCATGAGTTTTTGAGCTTGACTTTGGAGAAGAGGGCGTCGATACATCATATTGTGGAGTTCAAGGAGGAGTTGT GCTTGACTAAACATACGTATGATATGCTTAAGAAGCAGCCCCGGACATTTTATCTTGCGGGGACAGAGATGAATTGGGTTGTGTTTTTGAAAGATGCTTA TGATGAGAATGGGGGTTTGATTGACAAGGATTCACAGGTGATTTTCAATGAGAAACTGTACAAGTATGCTCAAATGAAGGAAGGGGAATTGGATTCAAGT GTATGGAAGAGTTGA
AA sequence Show only first row Show all	>Potri.002G097900.1 pacid=42779155 polypeptide=Potri.002G097900.1.p locus=Potri.002G097900 ID=Potri.002G097900.1.v4.1 annot-version=v4.1 MAWRLLLSKSTSSKTLTSPPLQNPTPNPLLSLFSSHFSTSFLVTKTPKKHKKKREKPESPRTRLVQHPSTRIPQFESLLERDSYFRFLTKSKQFLSQQPE RILRLDDAGKLHQELGFPRGRKIHRFLQRHPLIFQTYRHTDNKLWVGFTDFMEELLEEEKEIMDSMESDRVNKVRKLLMMSKNKRIPLSKIHHCRLLLGI PDDFRDRVAKYPDYFRIVVEGDGKRILELVNWDPSLAVSKLEKEFMVNEEKAKRAFKFPVKHGKDLDLEVEDTRRLNLLNTLPLVSPYSDGERLELWSLE AEKYRVGILHEFLSLTLEKRASIHHIVEFKEELCLTKHTYDMLKKQPRTFYLAGTEMNWVVFLKDAYDENGGLIDKDSQVIFNEKLYKYAQMKEGELDSS VWKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08940			Ubiquitin carboxyl-terminal hy...		Potri.002G097900 [exp]	0	1
AT3G61800			unknown protein		Potri.014G099300 [exp]	4.47	0.8745
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Potri.009G105600 [exp]	5.00	0.8865
AT1G44820			Peptidase M20/M25/M40 family p...		Potri.002G085400 [exp]	11.74	0.8516
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Potri.011G098100 [exp]	14.14	0.8502	DRT111.1
					Potri.019G025866 [exp]	14.49	0.8831
					Potri.011G160250 [exp]	15.42	0.8631
					Potri.019G014392 [exp]	16.09	0.8812
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.017G057100 [exp]	16.73	0.8463
					Potri.019G129780 [exp]	19.59	0.8802
AT4G01810			Sec23/Sec24 protein transport ...		Potri.002G187100 [exp]	21.21	0.8631

Compare expression of checked genes

Potri.002G097900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.