Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08950 404 / 3e-142 EXO EXORDIUM, Phosphate-responsive 1 family protein (.1) AT1G35140 369 / 1e-128 EXL1, EXL7, PHI-1 PHOSPHATE-INDUCED 1, EXORDIUM like 1, Phosphate-responsive 1 family protein (.1) AT5G64260 339 / 9e-117 EXL2, MSJ1.10 EXORDIUM like 2 (.1) AT5G09440 280 / 5e-94 EXL4 EXORDIUM like 4 (.1) AT5G51550 139 / 2e-38 EXL3 EXORDIUM like 3 (.1) AT3G02970 137 / 1e-37 EXL6 EXORDIUM like 6 (.1) AT2G17230 126 / 2e-33 EXL5 EXORDIUM like 5 (.1) AT2G35150 117 / 2e-30 EXL7, EXL1 EXORDIUM LIKE 7, EXORDIUM like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G163700 [exp] 430 / 2e-152 AT4G08950 431 / 4e-153 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163500 [exp] 429 / 7e-152 AT4G08950 430 / 2e-152 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163600 [exp] 426 / 5e-151 AT4G08950 438 / 1e-155 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.002G098800 [exp] 422 / 2e-149 AT4G08950 430 / 1e-152 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163300 [exp] 421 / 5e-149 AT4G08950 436 / 8e-155 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163000 [exp] 349 / 1e-120 AT5G64260 379 / 8e-133 EXORDIUM like 2 (.1) Potri.001G311700 [exp] 329 / 6e-113 AT5G64260 444 / 2e-158 EXORDIUM like 2 (.1) Potri.017G051700 [exp] 327 / 3e-112 AT5G64260 439 / 2e-156 EXORDIUM like 2 (.1) Potri.002G098700 [exp] 266 / 5e-89 AT4G08950 256 / 2e-85 EXORDIUM, Phosphate-responsive 1 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021370 [exp] 382 / 3e-133 AT4G08950 403 / 1e-141 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10017050 [exp] 382 / 3e-133 AT4G08950 404 / 2e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10010352 [exp] 321 / 2e-109 AT5G64260 378 / 2e-132 EXORDIUM like 2 (.1) Lus10036484 [exp] 240 / 6e-78 AT5G64260 301 / 2e-102 EXORDIUM like 2 (.1) Lus10039143 [exp] 173 / 8e-52 AT5G64260 202 / 1e-63 EXORDIUM like 2 (.1) Lus10013789 [exp] 172 / 1e-51 AT5G64260 203 / 1e-63 EXORDIUM like 2 (.1) Lus10031130 [exp] 137 / 2e-37 AT5G51550 526 / 0.0 EXORDIUM like 3 (.1) Lus10018314 [exp] 129 / 1e-34 AT2G35150 395 / 5e-138 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10013834 [exp] 122 / 7e-32 AT2G17230 496 / 4e-177 EXORDIUM like 5 (.1) Lus10026548 [exp] 116 / 8e-30 AT2G17230 499 / 2e-178 EXORDIUM like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04674 [poplar] [flax] Phi_1 Phosphate-induced protein 1 conserved region
Representative CDS sequence Show only first row Show all	>Potri.002G098600.2 pacid=42777739 polypeptide=Potri.002G098600.2.p locus=Potri.002G098600 ID=Potri.002G098600.2.v4.1 annot-version=v4.1 ATGGCTTCTTTACACTTCCAGTTCGCTTTGAAATCGCTCCTTCTAGTCTGTCTTTTTCATGTCTCTTTTGCTGCTAGGAAGCTTAATGAGCTAGTGCAAG ATCAACCTCAACTCTTGCGATACCACGATGGGGCTCTTCTTTATGGTAAAATCTCAGTCAATCTCATTTGGTATGGCAAGTTCAAGCCATCCCAAAGAGC TATTATCTCTGATTTTGTCACCTCACTGTCAGTTTCACCATCATCGCTCAAAGACAGCCAACCTTCGGTAGCCAAGTGGTGGGAAACCACAGAAAAATAC TACCATCTCACTTCAAAGAAAAACACCCTTTCCCTAACTCTAGGCACACAAATTCTCGATGCAAAATATTCGCTTGGAAAATCACTCACAGACAAACAGA TCGTAGAGTTGGCCTCGAAGGGTGACCAAAAAGATGCTGTTAACATTGTACTCACATCTTCTGATGTTACAGTTGAAGGGTTTTGCTTAAATAGATGCGG CACTCATGGGTCTGCCTTGGGATCTAAAAGTGGCAACATTAAGGGCAAGAACTACAGGTTTGCTTACATTTGGGTTGGTAACTCAGAGACTCAATGTCCA GGTTACTGTGCCTGGCCATTCCACCAACCGATCTATGGACCACAAAACCCACCATTGGTCGCACCCAACAATGATGTGGGTCTAGACGGTATGGTTATCA ATTTGGCAAGCCTTATGGCTGGCACTGCAACAAATCCCTTTGGAAATGGTTACTACCAGGGTCCTAAGGAGGCACCACTAGAGGCTGCATCAGCTTGCCC TGGCGTTTATGGCAAGGGGGCTTATCCTGGTTATGCTGGTAGCTTGTTGGTCGATTCTACTACTGGTGCCAGCTATAATGCACATGGCAGTAATGGAAGG AAATACCTGCTCCCTGCTTTGTACGATCCTTCAACATCAACTTGTTCTACTTTGGTCTGA
AA sequence Show only first row Show all	>Potri.002G098600.2 pacid=42777739 polypeptide=Potri.002G098600.2.p locus=Potri.002G098600 ID=Potri.002G098600.2.v4.1 annot-version=v4.1 MASLHFQFALKSLLLVCLFHVSFAARKLNELVQDQPQLLRYHDGALLYGKISVNLIWYGKFKPSQRAIISDFVTSLSVSPSSLKDSQPSVAKWWETTEKY YHLTSKKNTLSLTLGTQILDAKYSLGKSLTDKQIVELASKGDQKDAVNIVLTSSDVTVEGFCLNRCGTHGSALGSKSGNIKGKNYRFAYIWVGNSETQCP GYCAWPFHQPIYGPQNPPLVAPNNDVGLDGMVINLASLMAGTATNPFGNGYYQGPKEAPLEAASACPGVYGKGAYPGYAGSLLVDSTTGASYNAHGSNGR KYLLPALYDPSTSTCSTLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.002G098600 [exp]	0	1
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.011G128000 [exp]	2.00	0.8584
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.010G001100 [exp]	2.64	0.8649	ATSEB1.1
AT2G15320			Leucine-rich repeat (LRR) fami...		Potri.009G097100 [exp]	3.16	0.7735
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.005G163300 [exp]	4.58	0.8374
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.013G005700 [exp]	6.32	0.8346	Pt-XTH3.1
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.009G097800 [exp]	7.14	0.7550	CYCD3.2
AT1G45688			unknown protein		Potri.002G124600 [exp]	8.12	0.8003
AT5G64310		ATAGP1, AGP1	arabinogalactan protein 1 (.1)		Potri.001G310400 [exp]	8.77	0.7900
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Potri.018G100400 [exp]	8.94	0.7893	GAE1.1
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.005G163600 [exp]	9.74	0.8039

Compare expression of checked genes

Potri.002G098600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.