Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08950 257 / 1e-85 EXO EXORDIUM, Phosphate-responsive 1 family protein (.1) AT1G35140 251 / 3e-83 EXL1, EXL7, PHI-1 PHOSPHATE-INDUCED 1, EXORDIUM like 1, Phosphate-responsive 1 family protein (.1) AT5G64260 222 / 5e-72 EXL2, MSJ1.10 EXORDIUM like 2 (.1) AT5G09440 195 / 7e-62 EXL4 EXORDIUM like 4 (.1) AT3G02970 88 / 2e-20 EXL6 EXORDIUM like 6 (.1) AT5G51550 79 / 4e-17 EXL3 EXORDIUM like 3 (.1) AT2G35150 69 / 2e-13 EXL7, EXL1 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) AT2G17230 62 / 5e-11 EXL5 EXORDIUM like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G098800 [exp] 335 / 4e-116 AT4G08950 430 / 1e-152 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163700 [exp] 332 / 5e-115 AT4G08950 431 / 4e-153 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163600 [exp] 332 / 5e-115 AT4G08950 438 / 1e-155 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163500 [exp] 331 / 1e-114 AT4G08950 430 / 2e-152 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163300 [exp] 328 / 1e-113 AT4G08950 436 / 8e-155 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.002G098600 [exp] 291 / 7e-99 AT4G08950 404 / 4e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Potri.005G163000 [exp] 248 / 4e-82 AT5G64260 379 / 8e-133 EXORDIUM like 2 (.1) Potri.001G311700 [exp] 231 / 2e-75 AT5G64260 444 / 2e-158 EXORDIUM like 2 (.1) Potri.017G051700 [exp] 227 / 4e-74 AT5G64260 439 / 2e-156 EXORDIUM like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021370 [exp] 276 / 5e-93 AT4G08950 403 / 1e-141 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10017050 [exp] 276 / 8e-93 AT4G08950 404 / 2e-142 EXORDIUM, Phosphate-responsive 1 family protein (.1) Lus10010352 [exp] 211 / 1e-67 AT5G64260 378 / 2e-132 EXORDIUM like 2 (.1) Lus10036484 [exp] 163 / 3e-49 AT5G64260 301 / 2e-102 EXORDIUM like 2 (.1) Lus10013789 [exp] 116 / 5e-31 AT5G64260 203 / 1e-63 EXORDIUM like 2 (.1) Lus10039143 [exp] 115 / 1e-30 AT5G64260 202 / 1e-63 EXORDIUM like 2 (.1) Lus10018314 [exp] 85 / 5e-19 AT2G35150 395 / 5e-138 EXORDIUM LIKE 7, EXORDIUM like 1 (.1) Lus10031130 [exp] 83 / 3e-18 AT5G51550 526 / 0.0 EXORDIUM like 3 (.1) Lus10031709 [exp] 72 / 6e-15 AT5G51550 377 / 2e-132 EXORDIUM like 3 (.1) Lus10013834 [exp] 63 / 3e-11 AT2G17230 496 / 4e-177 EXORDIUM like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04674 [poplar] [flax] Phi_1 Phosphate-induced protein 1 conserved region
Representative CDS sequence Show only first row Show all	>Potri.002G098700.2 pacid=42779211 polypeptide=Potri.002G098702.1.p locus=Potri.002G098700 ID=Potri.002G098700.2.v4.1 annot-version=v4.1 ATGGTCTTGTCACCCAGGTCTCTTGTTCTTCTCCTCCAAGTTGCTTTTTTGGTCTCAGCAGCTAGGAAGCTTGCCGAGTCAGACCAAACTGATCAACAAC CGCTTCCGTTTCGATACCACAATGGCCCCCTTCTAACCGGAAATATCTCTATCAACTTGATCTGGTACGGCAAGTTTAAGCCTTCTCAACGTACCGAGAA ATACTACAAAACCATCAAGTCCGAAAAGTCCCCCTCTCCCGTCCTCTCTCTGCGAACACAGTTCTTGGACGAGGGTTATTCCTTGAGCAAATCCCTCTCT AGCAAGCAAATCGTACAATTAGCATTAAAAGGTTGCCAAAGGGACGCAGTCAATGTTATTTTGACAGCATCTGATGTTGCAGTTGAGGGTTTTTGCTCTG GTAAGTGTGGCACTCATGGGTCCTCTTTAAAGACTCGATGCCCAGGTCAATGCGCATGGCCACTCTACCAACCAATTTATGGGCCACAAAGCCCACTTTT GGTTGCACCAAACAACGACGTGGGTTTGGACGGTCCCAAAGAAGCACCACTGGACGCTGCATCAGGCTGTCCTGGGGTTTATGGCAAAGGATCCTATCCA GGTTATGCTGGGGATCTTTTGATAGACTCGGCAACTGGTGCTAGCTATAATGCACATGGTGTCAATGGCAGGAAATACTTGCTTCCTGCTTTGTTTGACC CTTCAACATCGACTGGTGCTTCTTTGGTGTGA
AA sequence Show only first row Show all	>Potri.002G098700.2 pacid=42779211 polypeptide=Potri.002G098702.1.p locus=Potri.002G098700 ID=Potri.002G098700.2.v4.1 annot-version=v4.1 MVLSPRSLVLLLQVAFLVSAARKLAESDQTDQQPLPFRYHNGPLLTGNISINLIWYGKFKPSQRTEKYYKTIKSEKSPSPVLSLRTQFLDEGYSLSKSLS SKQIVQLALKGCQRDAVNVILTASDVAVEGFCSGKCGTHGSSLKTRCPGQCAWPLYQPIYGPQSPLLVAPNNDVGLDGPKEAPLDAASGCPGVYGKGSYP GYAGDLLIDSATGASYNAHGVNGRKYLLPALFDPSTSTGASLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.002G098700 [exp]	0	1
AT3G26020			Protein phosphatase 2A regulat...		Potri.004G177900 [exp]	6.48	0.7731
					Potri.012G125200 [exp]	11.22	0.7052
AT2G23260		UGT84B1	UDP-glucosyl transferase 84B1 ...		Potri.009G095500 [exp]	11.48	0.7208	ZOG1.18
					Potri.004G047566 [exp]	15.74	0.7011
					Potri.009G042350 [exp]	19.36	0.6661
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Potri.001G299700 [exp]	22.97	0.6907
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G031000 [exp]	23.49	0.6860
					Potri.014G116166 [exp]	25.09	0.6842
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.006G098100 [exp]	25.92	0.6708	Pt-MDPIP1.4
AT2G23260		UGT84B1	UDP-glucosyl transferase 84B1 ...		Potri.009G095200 [exp]	28.77	0.6774

Compare expression of checked genes

Potri.002G098700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.