Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22410 845 / 0 Class-II DAHP synthetase family protein (.1) AT4G33510 833 / 0 DHS2 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2) AT4G39980 819 / 0 DHS1 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G162800 [exp] 999 / 0 AT1G22410 869 / 0.0 Class-II DAHP synthetase family protein (.1) Potri.005G073300 [exp] 868 / 0 AT4G39980 891 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Potri.007G095700 [exp] 800 / 0 AT4G39980 796 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Potri.001G150500 [exp] 789 / 0 AT4G33510 819 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000636 [exp] 848 / 0 AT4G39980 860 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10023152 [exp] 841 / 0 AT4G39980 847 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10025739 [exp] 816 / 0 AT4G39980 848 / 0.0 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (.1) Lus10035923 [exp] 810 / 0 AT1G22410 840 / 0.0 Class-II DAHP synthetase family protein (.1) Lus10001002 [exp] 781 / 0 AT4G33510 818 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2) Lus10011022 [exp] 653 / 0 AT4G33510 658 / 0.0 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF01474 [poplar] [flax] DAHP_synth_2 Class-II DAHP synthetase family
Representative CDS sequence Show only first row Show all	>Potri.002G099200.1 pacid=42779987 polypeptide=Potri.002G099200.1.p locus=Potri.002G099200 ID=Potri.002G099200.1.v4.1 annot-version=v4.1 ATGTCTCTAACTAGCAGTTCCGTAATCCCTACCAAATCCTTGATCCCCTCTAACAAGCCCCATCATCCTTGTTTCTTCACCACTAAACCTTCCAGATCCA TCCTCCACATCTCCGCTGTACACTCAGCTGATCCTTCCAAATCACCATCACCCATTAAAACACCTGCAGCAACATCCACTAAAGCAGCAACCGTTGCTCC AACAACCAATGTGGGTACTGGGAAATGGACTGTTGAAAGCTGGAAATCCAAGAAGGCCTTGCAACTCCCTGAATATCCTAACAAAGAAGACCTTGATTCG GTTCTCGAAACCCTCGACGCCTTTCCTCCGATTGTTTTCGCTGGTGAGGCCAGGAATTTAGAGGAGAGGCTCGCTGAGGCTGCTATGGGCAATGCGTTTT TGCTGCAAGGAGGTGATTGTGCTGAGAGTTTTAAAGAGTTCAATGCTAATAATATTAGGGACACTTTCAGGATTCTTCTTCAAATGGGCGCTGTTTTGAT GTTCGGTGGTCAAATGCCCGTTATCAAGGTGGGGAGGATGGCAGGGCAGTTTGCGAAGCCAAGATCGGATCCACTGGAGGAAAAAAATGGAGTGAAATTA CCAAGTTACAGAGGGGATAATGTGAATGGAGATGCTTTTGATGAGAAGTCAAGGATACCTGACCCACAGAGGATGATCAGGGCATACTGTCAATCAGCAG CCACTTTGAATCTCCTCAGGGCGTTTGCTACTGGTGGTTATGCAGCTATGCAGAGGGTTACTCAGTGGAATTTGGATTTCACCGAGCACAGTGAGCAGGG AGATAGGTACCGGGAACTTGCCCACCGGGTTGATGAGGCCCTTGGATTCATGGCCGCAGCTGGTCTCACTGTTGATCATCCTATCATGACAACAACTGAG TTTTGGACATCCCATGAGTGCTTGCTATTGCCATATGAGCAATCACTTACTAGGCTGGATTCAACCTCAGGTCTTTACTATGACTGCTCAGCCCATTTTC TTTGGGCTGGTGAGCGTACCAGGCAGCTAGATGGTGCTCATGTTGAGTTTTTGAGAGGAGTCGCAAATCCCCTAGGAATTAAGGTCAGTGATAAGATGGA TCCAAATGAGCTAGTTAAGCTCATAGAAATTTTGAATCCTCAAAATAAACCTGGCAGAATAACAATCATTACAAGAATGGGAGCTGAGAACATGAGAGTG AAGCTTCCTCATCTAATAAGGGCTGTTCGCAGGGCAGGACAAATTGTCACATGGGTCAGTGATCCTATGCATGGAAACACCATAAAGGCTCCTTGTGGGC TGAAAACTCGCCCATTCGATGCCATCAGGGCGGAGGTGAGAGCCTTCTTTGATGTGCATGAGCAAGAAGGAAGCCACCCAGGAGGCGTTCATCTAGAGAT GACTGGTCAGAATGTGACAGAGTGCATTGGTGGATCACGGCCTGTGACATTTGATGATTTGAGTTCACGCTACCACACCCATTGTGATCCCAGGCTCAAT GCTTCACAATCTCTAGAGCTTGCATTCATCATTGCAGAGCGTCTTAGAAAGAGGAGGATTGGATTACAACCTTCTATTGCACCGGCATTGCTGTAG
AA sequence Show only first row Show all	>Potri.002G099200.1 pacid=42779987 polypeptide=Potri.002G099200.1.p locus=Potri.002G099200 ID=Potri.002G099200.1.v4.1 annot-version=v4.1 MSLTSSSVIPTKSLIPSNKPHHPCFFTTKPSRSILHISAVHSADPSKSPSPIKTPAATSTKAATVAPTTNVGTGKWTVESWKSKKALQLPEYPNKEDLDS VLETLDAFPPIVFAGEARNLEERLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRILLQMGAVLMFGGQMPVIKVGRMAGQFAKPRSDPLEEKNGVKL PSYRGDNVNGDAFDEKSRIPDPQRMIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELAHRVDEALGFMAAAGLTVDHPIMTTTE FWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFLWAGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITIITRMGAENMRV KLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRPVTFDDLSSRYHTHCDPRLN ASQSLELAFIIAERLRKRRIGLQPSIAPALL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22410			Class-II DAHP synthetase famil...		Potri.002G099200 [exp]	0	1
AT5G41800			Transmembrane amino acid trans...		Potri.003G138100 [exp]	1.73	0.8948
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.011G058400 [exp]	2.44	0.8918
					Potri.001G026501 [exp]	2.44	0.8913
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Potri.002G008800 [exp]	5.00	0.8819	HB1.3
AT5G13810			Glutaredoxin family protein (....		Potri.003G198100 [exp]	5.29	0.8564
AT3G04810		ATNEK2	NIMA-related kinase 2 (.1.2)		Potri.002G049400 [exp]	5.91	0.8748
AT5G42710			unknown protein		Potri.002G261700 [exp]	6.00	0.8882
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.003G183900 [exp]	6.92	0.8791
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Potri.004G105700 [exp]	8.06	0.8565
AT5G22400			Rho GTPase activating protein ...		Potri.006G211200 [exp]	8.48	0.8711

Compare expression of checked genes

Potri.002G099200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.