Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78280 1234 / 0 transferases, transferring glycosyl groups (.1) AT5G06550 251 / 2e-73 unknown protein AT5G63080 89 / 3e-18 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G20810 44 / 0.0004 JMJ30, JMJD5 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065400 [exp] 247 / 8e-72 AT5G06550 711 / 0.0 unknown protein Potri.015G080400 [exp] 87 / 1e-17 AT5G63080 548 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G016200 [exp] 47 / 5e-05 AT3G20810 540 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.006G166300 [exp] 44 / 0.0004 AT5G57360 972 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010350 [exp] 1337 / 0 AT1G78280 1211 / 0.0 transferases, transferring glycosyl groups (.1) Lus10036482 [exp] 1320 / 0 AT1G78280 1194 / 0.0 transferases, transferring glycosyl groups (.1) Lus10029343 [exp] 254 / 2e-74 AT5G06550 730 / 0.0 unknown protein Lus10016202 [exp] 248 / 1e-69 AT5G06550 724 / 0.0 unknown protein Lus10001249 [exp] 54 / 2e-07 AT5G63080 232 / 8e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10008727 [exp] 52 / 6e-07 AT5G36950 286 / 5e-94 DegP protease 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like CL0029 [poplar] [flax] Cupin PF13621 [poplar] [flax] Cupin_8 Cupin-like domain
Representative CDS sequence Show only first row Show all	>Potri.002G099400.2 pacid=42778733 polypeptide=Potri.002G099400.2.p locus=Potri.002G099400 ID=Potri.002G099400.2.v4.1 annot-version=v4.1 ATGGAGATTTCTCAAGTTGAGGTTTTAGAAATTAAAGATCGCAGAGTTGAAGGTCTAGGCATTCTTCAAGTCCTCCCCGATGAACTCATCTGCTCTATTT TAGACAATCTAACTCCTCGCGATGTCGCTCGCTTCGCTTGTGTTAGCAGTGTGATGTACATTTTATGCAACGAAGAACCACTGTGGATGAGCCTGTGCCT TAACAGGGTAAACGGTCCGCTTCAGTATAAAGGCTCCTGGAAGAAAACTGCATTGGATGTAGAGAATGTTCCGGAAGAATATCAAGAACGTTGTGGAAAA CCACTTCATTTTAATGGGTTCAGCTCTTTGTTTTTGTATAAAAGATTATACAGGTGCCACACCACGTTGAGTGGTTTTAATTTTGATGATGGAAATGTGG AAAGAAGGGGAGACTTGTCTTTGGAAGAATTTTCTCAAGAGTATGATGGGAGGAAACCGGTTTTGCTTGCTGGATTGGCTGATACTTGGCCAGCACGGAA TACATGGACAATTGACCAGCTATCTCTGAAATACGGAGATATAGCTTTTAGGATTTCTCAGAGGAGCTGTAAGAAAATCTCAATGAAAATAAAAGATTAT GTATCGTACATGTATCTTCAACATGATGAGGATCCCCTATATATTTTTGATGACAAGTTTGGGGAAACTGCACCCAGCTTGTTGAAGGATTACAGTGTTC CTCATCTGTTTCAAGAAGACCTGTTTGAGGTCTTAGATGGAGAACAACGACCACCATTTAGATGGCTTATTATGGGCCCCGAGAGATCTGGTGCCTCTTG GCATGTTGATCCATCTCTCACCAGTGCTTGGAATACTCTTCTATGTGGCCGTAAAAGGTGGGCCTTGTATCCTCCTGGAAGGGTACCTTTAGGTGTCACT GTGCATGTAAATGAAGACGATGGTGATGTCAATATTGACACACCATCATCATTGCAGTGGTGGTTAGATTTTTATCCACTTCTCCCTGACGAAGACAAGC CGATTGAGTGTACCCAACTACCGGGGGAGACAATTTTTGTTCCAAGTGGATGGTGGCACTGCGTCCTGAATCTTGAGCCAACTGTTGCTGTTACACAAAA TTTTGTGAACTCCAAAAACTTTGAATATGTATGTTTAGATATGGCACCTGGTTATCGTCATAAAGGAGTTTGCCGAGTTGGATTGTTGGCTCTTGATGAT AGCAGTCTTGAGGATGTCAAAATGAATATGGATTATGATAAAGATGATCTGAGTTACGCAGACCTGACAAGGAAAGAGAAGAGGATCAGAGTTCAAGAAC CTATTGAAGATCCCGAATATAAAACAACTGCTAATGGTGCCTCGAAAAGTTACAATTTGTGGAAACAAGGTTTTTCTTATGACATAAAGTTCTTAGCAAT GTATTTGGATAAAGATAGAAACCACTACAGTTCTCCATGGAGCTCAGGCAACAGCATTGGACCACGAGAAATGAGAGAGTGGCTGTCAAAGCTTTGGCTT GGCAGGCCAGGACTGAGAGAGCTTGTATGGAAGGGAGCATGTCTTGCGATACAAGCAGATAAGTGGTTAGATTGTCTTCAAGAAATTTGTGCCTTCCACA ATTTGCCTTCTCCAACCGCTGATGAGAAGCTTCCTGTTGGCACGGGTAGCAATCCTGTTTATCTCCTAGCTGACTGTGCAATTAAAATCTTAGTTGAAGG AGGGCTGGAAGCTACAATGTATGCTTTAGGCACTGAGCTTGAGTTCTATAGTCTGCTGTCCAAAGTCAACTCCCCTCTGAAAAATCATGTTCCTGATGTT TTGGCAAGTGGAATTCTTTATCTTGACAATGGAGCTCTCAAAATTGTGCCTTGGGATGGCAAAGGAGTGCCTATTGTGATTGGTAACTGCAATCTGGTTC CAGAAAATTGGAAAGAAGATGATTTCCTTTTTGGTGTTTGGGGAAAAAAACAATTTGAATGTAGAAAAGCTGGGATGCCAATGAATGAGCCAATAAATTC ATCTGGATGCACAAGCATATGGCCATTTATCATAACAAGGAGATGCAAAGGAAAGATATTTGCTCAATTAAGAGATATGTTGTCATGTGAAGAGGTGCTA AACTTGACTTCCTTTTTGGGAGAGCAGCTGCGCAACCTTCATCTCTTACCCTGTCCATCTTTAAAGAAATCAACTTTCTCAGATATCAAACTAAAAGTGA AGTTGCCCTTTGCTGATGGTTATATGGATGATATTCCCACACCAGAAATTCCTGAAGAATGGAATATCTTCATCAGAACTCTATGCAGGAGAAAGATGAA TGTCACAAACTGTTTGGAAAATTGGGGGGATCCCATTCCTAGAACACTGATAGAAAAAGTCGATGATTACATCCCAGATGATCTTACAAAGCTGTTGAAT ACTTTCCAGGCTGAAAATGGCACAAACAAAATCTGTAAGCCTTGCTCCTGGATACACTCTGATATTATGGATGACAATGTTCACATGGAACCATATTGGA TTAGCTCGTGCTCTAGGGGCAATGCTTCAGATGCTTGTCTGGCAGACAATGATTGCGCTGCTGGCAATGATCATGGTGTTGATAAATCATGGTGTCCTAG CCACATTCTTGATTTCAGTAATCTTTCTATTGGTGACCGCATTTATGATGTGATACCGATATACTTGGATATCTTTAGAGGTGATTCCAGTCTCTTTAAG CAATTCTTAGAGAGCTATAGACTACCTTTTTTGACAAGAAACCAGGAGGAAGTAATTGATGGTGGTGATAAATTTGAAAGACTGTCATACCATGCCATGT GCTACTGTATTTTGAATGAAGAGAACATCTTGGGAGCTATTTTCAGTATCTGGAAGGAACTTAGAATGGCGAAGTCATGGGAAGAAGTTGAGTTGTCTGT GTGGGGTGAACTGAATAATTACAAGTGCGTCTCCTGA
AA sequence Show only first row Show all	>Potri.002G099400.2 pacid=42778733 polypeptide=Potri.002G099400.2.p locus=Potri.002G099400 ID=Potri.002G099400.2.v4.1 annot-version=v4.1 MEISQVEVLEIKDRRVEGLGILQVLPDELICSILDNLTPRDVARFACVSSVMYILCNEEPLWMSLCLNRVNGPLQYKGSWKKTALDVENVPEEYQERCGK PLHFNGFSSLFLYKRLYRCHTTLSGFNFDDGNVERRGDLSLEEFSQEYDGRKPVLLAGLADTWPARNTWTIDQLSLKYGDIAFRISQRSCKKISMKIKDY VSYMYLQHDEDPLYIFDDKFGETAPSLLKDYSVPHLFQEDLFEVLDGEQRPPFRWLIMGPERSGASWHVDPSLTSAWNTLLCGRKRWALYPPGRVPLGVT VHVNEDDGDVNIDTPSSLQWWLDFYPLLPDEDKPIECTQLPGETIFVPSGWWHCVLNLEPTVAVTQNFVNSKNFEYVCLDMAPGYRHKGVCRVGLLALDD SSLEDVKMNMDYDKDDLSYADLTRKEKRIRVQEPIEDPEYKTTANGASKSYNLWKQGFSYDIKFLAMYLDKDRNHYSSPWSSGNSIGPREMREWLSKLWL GRPGLRELVWKGACLAIQADKWLDCLQEICAFHNLPSPTADEKLPVGTGSNPVYLLADCAIKILVEGGLEATMYALGTELEFYSLLSKVNSPLKNHVPDV LASGILYLDNGALKIVPWDGKGVPIVIGNCNLVPENWKEDDFLFGVWGKKQFECRKAGMPMNEPINSSGCTSIWPFIITRRCKGKIFAQLRDMLSCEEVL NLTSFLGEQLRNLHLLPCPSLKKSTFSDIKLKVKLPFADGYMDDIPTPEIPEEWNIFIRTLCRRKMNVTNCLENWGDPIPRTLIEKVDDYIPDDLTKLLN TFQAENGTNKICKPCSWIHSDIMDDNVHMEPYWISSCSRGNASDACLADNDCAAGNDHGVDKSWCPSHILDFSNLSIGDRIYDVIPIYLDIFRGDSSLFK QFLESYRLPFLTRNQEEVIDGGDKFERLSYHAMCYCILNEENILGAIFSIWKELRMAKSWEEVELSVWGELNNYKCVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78280			transferases, transferring gly...		Potri.002G099400 [exp]	0	1
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Potri.005G070900 [exp]	1.41	0.8755
AT3G11760			unknown protein		Potri.018G027200 [exp]	2.00	0.8495
AT2G14520			CBS domain-containing protein ...		Potri.001G288000 [exp]	2.44	0.8126
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Potri.007G097900 [exp]	3.00	0.8320
AT1G28760			Uncharacterized conserved prot...		Potri.013G064800 [exp]	3.46	0.8186
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Potri.008G101500 [exp]	3.74	0.7953
AT4G28400			Protein phosphatase 2C family ...		Potri.017G013300 [exp]	5.47	0.8153
AT5G46910			Transcription factor jumonji (...		Potri.003G096100 [exp]	7.74	0.7614
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Potri.003G121200 [exp]	10.90	0.7268	DREB64
AT1G20670			DNA-binding bromodomain-contai...		Potri.005G252200 [exp]	11.83	0.7020

Compare expression of checked genes

Potri.002G099400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.