Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10360 413 / 6e-148 RPS6B, EMB3010 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) AT4G31700 397 / 9e-142 RPS6A, RPS6 ribosomal protein S6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G311000 [exp] 444 / 3e-160 AT5G10360 421 / 3e-151 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Potri.005G162600 [exp] 442 / 1e-159 AT5G10360 419 / 1e-150 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Potri.007G096300 [exp] 441 / 5e-159 AT5G10360 417 / 2e-149 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Potri.005G072700 [exp] 440 / 1e-158 AT5G10360 416 / 2e-149 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007376 [exp] 421 / 3e-151 AT5G10360 451 / 3e-163 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10031021 [exp] 418 / 7e-150 AT5G10360 448 / 4e-162 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10027260 [exp] 418 / 7e-150 AT5G10360 448 / 8e-162 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10035414 [exp] 415 / 7e-148 AT5G10360 446 / 5e-160 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10020794 [exp] 421 / 2e-142 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01092 [poplar] [flax] Ribosomal_S6e Ribosomal protein S6e
Representative CDS sequence Show only first row Show all	>Potri.002G099500.1 pacid=42778236 polypeptide=Potri.002G099500.1.p locus=Potri.002G099500 ID=Potri.002G099500.1.v4.1 annot-version=v4.1 ATGAAGTTCAACATCGCATATCCCACTACGGGATGCCAGAAAAAGCTCGAAATCGACGATGACCAGAAGCTTCGGGCATTTTTTGATAAGAGGATCTCAC AGGAGGTCAGTGGCGATGCTCTTGGAGAGGAATTCAAGGGCTATGTTTTTGCGATAAAGGGAGGTTGTGACAAGCAAGGATTTCCCATGAAGCAGGGGGT GCTAACCCCTGGCCGTGTTCGTCTTTTGCTCCACAGAGGAACCCCCTGCTTCCGTGGATATGGAAGACGCAATGGAGAACGCAGGAGAAAATCTGTGCGC GGGTGCATCGTCAGTCAAGACCTTTCTGTTTTGAACTTGGTAATTGTGAAGAAGGGTGAGAATGATCTTCCTGGACTCACCGACACAGAGAAACCAAGAA TGAGAGGTCCCAAGAGAGCATCGAAGATCCGCAAGCTCTTTAATCTCTCAAAGGAGGATGATGTTCGCAAGTATGTCAACACTTACAGGAGATCATTCAC AACAAAATCTGGAAAGAAGGTCAGTAAGGGTCCCAAAATTCAGAGGTTGGTGACGCCACTGACTTTGCAAAGGAAGCGAGCAAGGATTTCAGATAAAAAG AAGAGAATCGCCAAGGCCAAGTCCGAGGCTGCTGAGTACCAGAAACTTCTCGCCACAAGATTGAAGGAGCAGAGAGAACGTCGCAGTGAGAGCTTAGCCA AGAAAAGGTCCAGGCTCTCTGTTGCTTCTAAGCCATCCATTGCTGCTTAG
AA sequence Show only first row Show all	>Potri.002G099500.1 pacid=42778236 polypeptide=Potri.002G099500.1.p locus=Potri.002G099500 ID=Potri.002G099500.1.v4.1 annot-version=v4.1 MKFNIAYPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFAIKGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVR GCIVSQDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRSFTTKSGKKVSKGPKIQRLVTPLTLQRKRARISDKK KRIAKAKSEAAEYQKLLATRLKEQRERRSESLAKKRSRLSVASKPSIAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.002G099500 [exp]	0	1
AT2G47110		UBQ6	ubiquitin 6 (.1.2)		Potri.002G190000 [exp]	1.00	0.9378
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.013G128600 [exp]	1.41	0.9112
AT4G12600			Ribosomal protein L7Ae/L30e/S1...		Potri.019G087100 [exp]	4.47	0.8978
AT4G18100			Ribosomal protein L32e (.1)		Potri.014G191000 [exp]	5.19	0.9053
AT5G15610			Proteasome component (PCI) dom...		Potri.017G095300 [exp]	6.48	0.8648
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Potri.004G188800 [exp]	7.34	0.8874	HDT902,Pt-HD2.1
AT5G59850			Ribosomal protein S8 family pr...		Potri.010G208700 [exp]	8.36	0.8861	Pt-WRP15.1
AT1G43170		RPL3A, ARP1, EM...	embryo defective 2207, ribosom...		Potri.002G066200 [exp]	8.77	0.8844	Pt-ARP1.2
AT5G07090			Ribosomal protein S4 (RPS4A) f...		Potri.015G033700 [exp]	8.94	0.8890	Pt-RPS4.2
AT2G19740			Ribosomal protein L31e family ...		Potri.009G064100 [exp]	9.16	0.8922

Compare expression of checked genes

Potri.002G099500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.