Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28220 229 / 2e-72 ATPUP3 purine permease 3 (.1) AT1G28230 225 / 7e-71 ATPUP1, PUP1 purine permease 1 (.1) AT2G33750 220 / 4e-69 ATPUP2 purine permease 2 (.1.2) AT4G18220 126 / 2e-33 Drug/metabolite transporter superfamily protein (.1) AT1G30840 121 / 3e-31 ATPUP4 purine permease 4 (.1.2) AT4G18210 117 / 1e-29 ATPUP10 purine permease 10 (.1) AT1G44750 115 / 6e-29 ATPUP11 purine permease 11 (.1.2.3) AT4G18190 107 / 3e-26 ATPUP6 purine permease 6 (.1) AT4G18195 105 / 2e-25 ATPUP8, AT4G18200 ARABIDOPSIS THALIANA PURINE PERMEASE 8, purine permease 8 (.1) AT4G08700 96 / 3e-22 ATPUP13 Drug/metabolite transporter superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G160300 [exp] 260 / 1e-84 AT1G28220 413 / 8e-145 purine permease 3 (.1) Potri.014G043900 [exp] 134 / 4e-36 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.001G352200 [exp] 133 / 1e-35 AT4G18220 315 / 1e-105 Drug/metabolite transporter superfamily protein (.1) Potri.001G352100 [exp] 129 / 5e-34 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.001G147600 [exp] 127 / 4e-33 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.006G184900 [exp] 124 / 2e-32 AT2G24220 404 / 6e-141 purine permease 5 (.1.2) Potri.003G156900 [exp] 113 / 6e-28 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.001G074100 [exp] 98 / 1e-22 AT1G30840 303 / 5e-101 purine permease 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020939 [exp] 301 / 1e-100 AT1G28220 286 / 9e-95 purine permease 3 (.1) Lus10008212 [exp] 301 / 2e-100 AT1G28220 293 / 7e-97 purine permease 3 (.1) Lus10008714 [exp] 299 / 1e-99 AT1G28220 286 / 7e-95 purine permease 3 (.1) Lus10008713 [exp] 298 / 5e-99 AT1G28220 288 / 2e-95 purine permease 3 (.1) Lus10026807 [exp] 269 / 3e-88 AT1G28220 273 / 7e-90 purine permease 3 (.1) Lus10036075 [exp] 266 / 4e-87 AT1G28220 273 / 5e-90 purine permease 3 (.1) Lus10020937 [exp] 256 / 4e-83 AT1G28220 258 / 3e-84 purine permease 3 (.1) Lus10020950 [exp] 253 / 2e-81 AT1G28220 448 / 3e-158 purine permease 3 (.1) Lus10035636 [exp] 232 / 1e-73 AT1G28220 346 / 3e-118 purine permease 3 (.1) Lus10010757 [exp] 229 / 1e-72 AT1G28220 350 / 8e-120 purine permease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.002G099600.1 pacid=42777293 polypeptide=Potri.002G099600.1.p locus=Potri.002G099600 ID=Potri.002G099600.1.v4.1 annot-version=v4.1 ATGGACACAGAGCTAGGAAACATGAATGAACCAGACCAGCATCAGAACAAGAAGCATATGAAGGCATTTCTGGTATTTTTAAACTGCATGTTAATGGCAG TTGGTCAAGTCGCAGGTCCATTACTTGTGAGGATTTACTATTTGCATGGAGGAAAGAGTAATTGGCTCGGTGCCTGGCTACTTACAGCTGGTTTCCCAAT CTTGATCATCCCAATAGCCATATCTTACATAAGAGCTAGAGCTAGAGCACAGGCCGGTAGATTATTGGTCACACCTTGGCTTTTTTCTGCTAGTGTCATC TTGGGACTCCTTCTTGGCCTTGATAGCTATCTTTACTCCTTTGGCATGTCATATCTCCCTGTTTCTGTTTCTTCCATTCTTGGTTCTAGTCAATTGGCCT TCACTGCAATTTTTGCATATATAATTGTCAAGCATAAGTTCACGCATTACTCGATAAATGCGGTGGCTTTGATGACTTTCGGGTCTGTTATTCTTGGTTT TCATATGAATGGAGACAGACCGAGTGGCGAGTCTAAAGGAAAATATATTCTGGGTTTCTTCATGACTATTGGTGGTGCAGCTCTTCATGGGTTTCTAATG CCTGCTTTGGAGTTTACTTACTTGAAGGCTGGCAAGGCCATCACCTTTGACCTTGTCCTGCAAGTTCAGTTCCTTATATCAATGTTTGCTACTCTATTTT GCTCTATCCCCATGATTATCAACAAGGACTTTAAGGCTATATCCAAAGAGGCAGCAGAGTTTGGTCTTGGTAAAACAAAGTACTACACCATACTATTAAT AGCAGCCATAGTATTGCAGTTATTAGTAATAGGAAGTCTGGGGGTGATATTTAACTCCTCGTCACTTTTAGGGGGGCTTGTGTCATCTCTTCTGGTTCCA GTCCAACAGGCATTTGCTGTGATGATCTTGAAAGAGGTCTTTAATGCAGAAAAGGGCATGGCCTTGGCCATGTGTCTATGGGGTTTTGCTTCTTACTTGT ATGGAGAATACCAGAAGCCAGAAGCCAACAAAGAAGAATCGACCCATTAG
AA sequence Show only first row Show all	>Potri.002G099600.1 pacid=42777293 polypeptide=Potri.002G099600.1.p locus=Potri.002G099600 ID=Potri.002G099600.1.v4.1 annot-version=v4.1 MDTELGNMNEPDQHQNKKHMKAFLVFLNCMLMAVGQVAGPLLVRIYYLHGGKSNWLGAWLLTAGFPILIIPIAISYIRARARAQAGRLLVTPWLFSASVI LGLLLGLDSYLYSFGMSYLPVSVSSILGSSQLAFTAIFAYIIVKHKFTHYSINAVALMTFGSVILGFHMNGDRPSGESKGKYILGFFMTIGGAALHGFLM PALEFTYLKAGKAITFDLVLQVQFLISMFATLFCSIPMIINKDFKAISKEAAEFGLGKTKYYTILLIAAIVLQLLVIGSLGVIFNSSSLLGGLVSSLLVP VQQAFAVMILKEVFNAEKGMALAMCLWGFASYLYGEYQKPEANKEESTH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28220		ATPUP3	purine permease 3 (.1)		Potri.002G099600 [exp]	0	1
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Potri.004G223900 [exp]	5.91	0.8708
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.002G114800 [exp]	6.32	0.8640
AT5G44170			S-adenosyl-L-methionine-depend...		Potri.001G148200 [exp]	6.63	0.8681
AT1G68400			leucine-rich repeat transmembr...		Potri.010G121700 [exp]	8.48	0.8678
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Potri.003G106400 [exp]	10.09	0.8042
AT2G42850		CYP718	"cytochrome P450, family 718",...		Potri.001G425675 [exp]	11.22	0.8415
AT4G16790			hydroxyproline-rich glycoprote...		Potri.001G155000 [exp]	14.66	0.8615
AT5G24280		GMI1	gamma-irradiation and mitomyci...		Potri.012G016100 [exp]	14.69	0.8317
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.012G042100 [exp]	16.15	0.8490
AT1G59730		ATH7	thioredoxin H-type 7 (.1)		Potri.008G194100 [exp]	16.43	0.8224

Compare expression of checked genes

Potri.002G099600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.