Plant FIBer expression Database

Potri.002G099900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78310 140 / 4e-39 VQ motif-containing protein (.1)
AT2G35230 57 / 9e-09 IKU1 HAIKU1, VQ motif-containing protein (.1.2)
AT5G46780 42 / 0.0004 VQ motif-containing protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G162300
[exp]
280 / 2e-93 AT1G78310 142 / 3e-40 VQ motif-containing protein (.1)
Potri.001G142400
[exp]
65 / 1e-11 AT2G35230 96 / 5e-22 HAIKU1, VQ motif-containing protein (.1.2)
Potri.003G091800
[exp]
65 / 1e-11 AT1G32610 71 / 1e-13 hydroxyproline-rich glycoprotein family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010346
[exp]
163 / 2e-48 AT1G78310 158 / 8e-47 VQ motif-containing protein (.1)
Lus10036479
[exp]
154 / 7e-45 AT1G78310 153 / 6e-45 VQ motif-containing protein (.1)
Lus10036480
[exp]
79 / 3e-16 AT1G78310 95 / 8e-22 VQ motif-containing protein (.1)
Lus10010348
[exp]
59 / 4e-10 AT1G78310 55 / 6e-09 VQ motif-containing protein (.1)
Lus10010347
[exp]
53 / 1e-08 AT1G78310 78 / 4e-18 VQ motif-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05678 VQ VQ motif
Representative CDS sequence
>Potri.002G099900.1 pacid=42778207 polypeptide=Potri.002G099900.1.p locus=Potri.002G099900 ID=Potri.002G099900.1.v4.1 annot-version=v4.1
ATGGATAAAAGCTGTCAATCATCTGGTGATTCTACAATCACCAGTAGTAATAGCAGCACCCACAATACCGCCATCGACAACAACAGAGATCACTATCTCA
AACACCTCAACAAACTCTCTCACAAGATCTCCAAACCCCCAATCACAACCACCACCGCAAATATAAAAAAGGGCCCCTTTGATCAACCCTGTCAGCAGCA
ATCACAAACGCAACTATCTCAGCCATCATCACAACAGCAACAAAATCAAAATCTGCAGGGGCAGCAGCAGCAGCAGCAGCATCAGCACCAACCGCCTGTT
TACAATATAAACAAGAATGATTTCCGTGACGTGGTACAAAAACTAACAGGATCTCCAGCTCATGAGAGATTCTCTACACCTCCACCCATACACCCACCCA
AACCTCAAAGCTCTCGCTTACAACGTATTCGTCCTCCGCCCTTGGCTCACGTTAGCAACCGCCCTCCTCCTTCGCTGAACAGCACCATCCCACCTCCTCA
ACAACCACCCCTGACCACCGTTCCGAACCCTAACACCTCCGCCTCTGCCACAAACAGTTTCATCCAACGGTCAACGGCACCTCTCTCCCCGTTACCGCCA
TTCCCGGCTGTTCACGCGGCGGCGGAATCGCCTGTTTCTGCTTACATGCGGTACCTCCAGAACACGATCTCTGCCGTTGATTCTAACAAGCAGTTCTCGG
GATTCTCGCCGCTGGCCCCGTTGGTTTCACCTCGATGGAACAATATGATGGCTCCACAACAGCAATTTGCCATGCCACCCCCGCAACAAGTAATGAACCC
CTCGCAGTTAGCAGGGATGGTCGCACCACAGCCGCAGTTTCAATTGCCAACGTCACCGCTACCATTTGGATGCATGAACTCACCGCGGTCTCCATATCCT
CTGCTTTCCCCGAGTTTGTTGCTTTCGCCATCTTCATTTCCTCTCTCACCGACAGTGCCCGTTACTAGCCCTAGATGGAGAGGTCTTTGA
AA sequence
>Potri.002G099900.1 pacid=42778207 polypeptide=Potri.002G099900.1.p locus=Potri.002G099900 ID=Potri.002G099900.1.v4.1 annot-version=v4.1
MDKSCQSSGDSTITSSNSSTHNTAIDNNRDHYLKHLNKLSHKISKPPITTTTANIKKGPFDQPCQQQSQTQLSQPSSQQQQNQNLQGQQQQQQHQHQPPV
YNINKNDFRDVVQKLTGSPAHERFSTPPPIHPPKPQSSRLQRIRPPPLAHVSNRPPPSLNSTIPPPQQPPLTTVPNPNTSASATNSFIQRSTAPLSPLPP
FPAVHAAAESPVSAYMRYLQNTISAVDSNKQFSGFSPLAPLVSPRWNNMMAPQQQFAMPPPQQVMNPSQLAGMVAPQPQFQLPTSPLPFGCMNSPRSPYP
LLSPSLLLSPSSFPLSPTVPVTSPRWRGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78310 VQ motif-containing protein (.... Potri.002G099900
[exp]
0 1
AT2G33490 hydroxyproline-rich glycoprote... Potri.001G324800
[exp]
1.73 0.8729
AT2G17410 ARID ARID/BRIGHT DNA-binding domain... Potri.004G208900
[exp]
4.47 0.8689
AT3G07565 Protein of unknown function (D... Potri.017G023300
[exp]
5.29 0.8276
AT5G38600 Proline-rich spliceosome-assoc... Potri.017G111300
[exp]
7.74 0.8484
AT1G28330 DYL1, DRM1 DORMANCY-ASSOCIATED PROTEIN 1,... Potri.004G047100
[exp]
8.24 0.7929
AT5G65200 ATPUB38 ARABIDOPSIS THALIANA PLANT U-B... Potri.012G076400
[exp]
8.48 0.8370
AT1G34320 Protein of unknown function (D... Potri.013G115300
[exp]
9.48 0.7965
AT1G32610 hydroxyproline-rich glycoprote... Potri.003G091800
[exp]
10.58 0.8427
AT1G55340 Protein of unknown function (D... Potri.006G233100
[exp]
12.00 0.8031
AT2G34730 myosin heavy chain-related (.1... Potri.001G466800
[exp]
16.52 0.8010

Potri.002G099900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.