Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22450 124 / 9e-36 ATCOX6B2, COX6B CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) AT4G28060 108 / 6e-31 Cytochrome c oxidase, subunit Vib family protein (.1) AT5G57815 105 / 6e-30 Cytochrome c oxidase, subunit Vib family protein (.1) AT1G32710 68 / 7e-15 Cytochrome c oxidase, subunit Vib family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G162100 [exp] 142 / 7e-43 AT1G22450 152 / 4e-47 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Potri.018G099900 [exp] 111 / 3e-32 AT5G57815 147 / 3e-48 Cytochrome c oxidase, subunit Vib family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008716 [exp] 126 / 1e-36 AT1G22450 173 / 4e-55 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Lus10020941 [exp] 125 / 8e-36 AT1G22450 138 / 9e-41 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Lus10010345 [exp] 114 / 4e-33 AT1G22450 142 / 4e-46 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Lus10036478 [exp] 113 / 1e-32 AT1G22450 146 / 2e-46 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Lus10040123 [exp] 93 / 3e-24 AT1G22450 121 / 9e-36 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0351 [poplar] [flax] CHCH PF02297 [poplar] [flax] COX6B Cytochrome oxidase c subunit VIb
Representative CDS sequence Show only first row Show all	>Potri.002G100000.9 pacid=42778570 polypeptide=Potri.002G100000.9.p locus=Potri.002G100000 ID=Potri.002G100000.9.v4.1 annot-version=v4.1 ATGGCCACCGAAACGCCGACACTATCTGAGCGATACGAACTGAAGGGAAAAGAAGAGAAGACAGATGTGGTTTCAAAACCTGTAGAAGTAAAAGAAGAGG AGAAGCCAGCGACTGCTGTTTCTGAGGAGGCTGTGGAGAAAGCTGAGGAAACACCACCACTTGCTGCTGAAGAAAAAACTGAAGATACTCCTGCTGCTGC TGAAGAAAGCACTGAAGCTCCCACTACTGATGAAAGCAGCAGTGAAGATGCTCCTGCCGCTGCTGAAGAAACCAGTGAAGGTACAGAAGAGAACTCAGGA GAAGAAGCTGCGGAAGAGAAGAAGGAGATTAAGCTTGAGACAGCACCAGCTGATTACCGCTTCCCAACCACAAATCAAACAAGGCACTGCTTTACCAGAT ACATTGAATATCATCGGTGCGTAGCTGCCAAGGGTGAAGGTGCTTCAGAGTGTGATAAGTTTGCCAAATATTATCGTTCTCTCTGCCCTAGTGAATGGGT ACGTATATCTGAGATCTTCAATATACTAAGGAGTATGATATTAGTTTTTACTTTCAACCACACAGGCTGTCCAAAAGCTGTTTAA
AA sequence Show only first row Show all	>Potri.002G100000.9 pacid=42778570 polypeptide=Potri.002G100000.9.p locus=Potri.002G100000 ID=Potri.002G100000.9.v4.1 annot-version=v4.1 MATETPTLSERYELKGKEEKTDVVSKPVEVKEEEKPATAVSEEAVEKAEETPPLAAEEKTEDTPAAAEESTEAPTTDESSSEDAPAAAEETSEGTEENSG EEAAEEKKEIKLETAPADYRFPTTNQTRHCFTRYIEYHRCVAAKGEGASECDKFAKYYRSLCPSEWVRISEIFNILRSMILVFTFNHTGCPKAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Potri.002G100000 [exp]	0	1
AT5G45775			Ribosomal L5P family protein (...		Potri.006G181600 [exp]	12.24	0.8369	RPL16.2
AT1G26880			Ribosomal protein L34e superfa...		Potri.012G108400 [exp]	14.83	0.8169	RPL34.4
AT3G25580			Thioredoxin superfamily protei...		Potri.001G297900 [exp]	20.78	0.7979
AT3G06700			Ribosomal L29e protein family ...		Potri.002G196800 [exp]	21.90	0.7552
AT4G10450			Ribosomal protein L6 family (....		Potri.011G147700 [exp]	22.49	0.8231	Pt-RPL9.4
AT5G02960			Ribosomal protein S12/S23 fami...		Potri.008G044400 [exp]	24.06	0.8225	Pt-RPS23.3
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Potri.019G131200 [exp]	34.85	0.8005	EIF2.2
AT2G39390			Ribosomal L29 family protein ...		Potri.010G212300 [exp]	35.15	0.8064	RPL35.2
AT1G57860			Translation protein SH3-like f...		Potri.006G195400 [exp]	35.59	0.8063
AT5G59850			Ribosomal protein S8 family pr...		Potri.010G208700 [exp]	43.49	0.7935	Pt-WRP15.1

Compare expression of checked genes

Potri.002G100000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.