Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22460 663 / 0 O-fucosyltransferase family protein (.1) AT5G64600 551 / 0 O-fucosyltransferase family protein (.1) AT2G37980 420 / 1e-140 O-fucosyltransferase family protein (.1) AT3G54100 417 / 1e-139 O-fucosyltransferase family protein (.1) AT5G01100 404 / 2e-134 O-fucosyltransferase family protein (.1) AT5G35570 393 / 4e-130 O-fucosyltransferase family protein (.1) AT3G02250 384 / 3e-128 O-fucosyltransferase family protein (.1) AT5G15740 382 / 1e-127 RRT1 O-fucosyltransferase family protein (.1) AT1G14020 381 / 3e-127 O-fucosyltransferase family protein (.1) AT2G03280 368 / 2e-122 O-fucosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G161800 [exp] 945 / 0 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G059600 [exp] 556 / 0 AT5G64600 673 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 426 / 4e-142 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 414 / 2e-138 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 399 / 3e-134 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G142400 [exp] 392 / 6e-130 AT5G35570 843 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 384 / 2e-128 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 380 / 1e-126 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 376 / 2e-125 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008719 [exp] 719 / 0 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10020943 [exp] 655 / 0 AT1G22460 594 / 0.0 O-fucosyltransferase family protein (.1) Lus10020882 [exp] 481 / 2e-166 AT5G64600 613 / 0.0 O-fucosyltransferase family protein (.1) Lus10035540 [exp] 402 / 3e-133 AT3G54100 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10017190 [exp] 400 / 1e-132 AT2G37980 781 / 0.0 O-fucosyltransferase family protein (.1) Lus10027753 [exp] 399 / 1e-132 AT3G54100 744 / 0.0 O-fucosyltransferase family protein (.1) Lus10021119 [exp] 399 / 2e-132 AT3G54100 783 / 0.0 O-fucosyltransferase family protein (.1) Lus10028253 [exp] 394 / 3e-131 AT2G37980 577 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 391 / 5e-131 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10040236 [exp] 391 / 1e-130 AT2G37980 573 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.002G100400.1 pacid=42777540 polypeptide=Potri.002G100400.1.p locus=Potri.002G100400 ID=Potri.002G100400.1.v4.1 annot-version=v4.1 ATGCAGATGCGGAGATGGAAGGCGGTGGGGTTGATGAGGAGGATACTATCATGCGCCATATGTACAATAGCAATGATGTCACTCCTCTCCGTACACTTGC ACATATTCCCTCGTCACTCTAAACTCCCTGATCCTTACAAGCTTCCTAATCCCCAAATTGAAATCAGAGACAAGATATTGGGCACAGAGCAAGAACAGAG GTGGACAAGTGAGTTCACTCCTCCCAATGTGTTCCTAGGCCCCCTCTCATCCCAACAGTTTCCGGTTTGGCGTACGAATTGTCCCAGACTATGGAAGCCT GTGCCAAATCGTGATTATATGCCTTGCACTCAACCTACTCCTAACTATACCGCTCCTCCAGAGTCGCGAGGTTATCTCCTAGCGCATACAAATGGTGGGC TCAACCAGATGCGAGCTGGGATATGTGATATGGTAGCTATTGCGCGTATCATAAATGCTACTCTTGTTGTTCCAGAACTAGATAAAAAGTCGTATTGGCA AGATTCCAGCAACTTTTCAGATGTCTTCAATGAAGATCATTTCATCAACGCTCTAGCTAATGATGTAAAAGTCATAAAAAAGCTCCCCATGGAAATGGGT GGTGCTACAAGAGCAGATAAATATTTTAAAAGCTGGTCTGGTATGGACTATTACCAGGGGGAGATAGCAAGCATGTGGGCTGATTATAAGGTTATTCTGG CTGCCAAGACCGACTCTCGTCTAGCAAATAACAATCTCCCTGCTGATATTCAGAAGCTGCGTTGCCGTGCCTGTTATGAAGCCCTCTGTTTCGCACCTCA AATTGAAGCAATGGGAAAGTTGTTGGTGGACCGCATGAGATCATATGGCACTTACATTGCTCTGCACTTACGATATGAGAAGGACATTCTTGCCTTCACT GGATGCACACATGGTTTATCTCCTGATGAAGCAGATGAACTAAAAAAGATCAGAGACGAAAATGATGAGTGGAAAGTGAAGGATATTGATCCCAGGGAGC AAAGATCTAAAGGTTTTTGCCCCTTAACTCCAAAGGAGGCTGCAATATTTCTATCTGCTCTTGGTTATCCATCAAATACCCCTATATACATTGCCGCGGG AGAGATATATGGAGGTGATTCATATATGGATGATCTACGATCCCGGTATCCTATGTTAATGAGCAAGGAAAAATTGGCATCTATTGAGGAGCTTGAACCA TTTGCCAATCATTCGACTCAGCTGGCTGCGCTTGATTATATATTATCTGTTGAAAGTGACGTATTCATGCCGACGTACTCGGGAAATATGGCAAGGGCTG TAGAAGGCCATCGTCGTTTTCTTGGACATAGAAGAACAATTTCCCCAGACAAGAAAGCACTTGTTCGTCTGTTTGATAAAATAGAGCAAGGAATAAAGAA AGAAGGCAAACTTTTATCAGACAAGGTCATTGAAAGGCACAAAAAACGGCAAGGCTCCCCAAGGAAGAGGAAAGGCCCCATTCCAGGAAGTAAGGGCATG GATAGATTTCGTTCAGAAGAAGCTTTTTATGTAAATCCTTTACCAGATTGTTTGTGTGCGCAATCCCGGAATCTGAACACCTCTGTGTCATAA
AA sequence Show only first row Show all	>Potri.002G100400.1 pacid=42777540 polypeptide=Potri.002G100400.1.p locus=Potri.002G100400 ID=Potri.002G100400.1.v4.1 annot-version=v4.1 MQMRRWKAVGLMRRILSCAICTIAMMSLLSVHLHIFPRHSKLPDPYKLPNPQIEIRDKILGTEQEQRWTSEFTPPNVFLGPLSSQQFPVWRTNCPRLWKP VPNRDYMPCTQPTPNYTAPPESRGYLLAHTNGGLNQMRAGICDMVAIARIINATLVVPELDKKSYWQDSSNFSDVFNEDHFINALANDVKVIKKLPMEMG GATRADKYFKSWSGMDYYQGEIASMWADYKVILAAKTDSRLANNNLPADIQKLRCRACYEALCFAPQIEAMGKLLVDRMRSYGTYIALHLRYEKDILAFT GCTHGLSPDEADELKKIRDENDEWKVKDIDPREQRSKGFCPLTPKEAAIFLSALGYPSNTPIYIAAGEIYGGDSYMDDLRSRYPMLMSKEKLASIEELEP FANHSTQLAALDYILSVESDVFMPTYSGNMARAVEGHRRFLGHRRTISPDKKALVRLFDKIEQGIKKEGKLLSDKVIERHKKRQGSPRKRKGPIPGSKGM DRFRSEEAFYVNPLPDCLCAQSRNLNTSVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22460			O-fucosyltransferase family pr...		Potri.002G100400 [exp]	0	1
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.002G123500 [exp]	1.00	0.8296
AT5G54530			Protein of unknown function, D...		Potri.001G410300 [exp]	7.41	0.6970
AT3G01860			unknown protein		Potri.010G058700 [exp]	12.64	0.7667
AT5G50130			NAD(P)-binding Rossmann-fold s...		Potri.012G087800 [exp]	14.83	0.7006
AT3G43590			zinc knuckle (CCHC-type) famil...		Potri.016G063800 [exp]	19.18	0.7334
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.008G022216 [exp]	20.34	0.6670
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Potri.005G107400 [exp]	21.90	0.6925
AT1G19835			Plant protein of unknown funct...		Potri.002G024400 [exp]	24.06	0.7598
AT2G29130		LAC2, ATLAC2	laccase 2 (.1)		Potri.001G184300 [exp]	25.41	0.6485
AT2G29130		LAC2, ATLAC2	laccase 2 (.1)		Potri.009G156800 [exp]	30.16	0.6521

Compare expression of checked genes

Potri.002G100400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.