Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G35220 1452 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010355 [exp] 1540 / 0 AT1G35220 1468 / 0.0 unknown protein Lus10036487 [exp] 1148 / 0 AT1G35220 1100 / 0.0 unknown protein Lus10036488 [exp] 318 / 5e-102 AT1G35220 293 / 2e-93 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14647 [poplar] [flax] FAM91_N FAM91 N-terminus PF14648 [poplar] [flax] FAM91_C FAM91 C-terminus
Representative CDS sequence Show only first row Show all	>Potri.002G100800.5 pacid=42778022 polypeptide=Potri.002G100800.5.p locus=Potri.002G100800 ID=Potri.002G100800.5.v4.1 annot-version=v4.1 ATGCAGCGTGCTCCGGTGACAATCGAGGAGCAGCTGATTTTGAAAGCGATAAAGGAGGAATGCCCATGGGAGAATCTCCCAAAAAGGCTTCAAGCCACTC TTAATTCTAAAGATGAATGGCATAGAAGGGTTATCGAACATTGTATTAAGAAAAGACTCCAATGGAATTCATGTTTTGCTCGCAAAGTATGCAAAGAAGG TGAATATTATGAAGACATGATGCGCTACTTGCGAAAGAATCTGGCGCTATTTCCCTATCACCTTGCAGATTATGTTTGCCGTGTAATGCGGTTATCACCT TTCAGATATTACTGTGATATGATATTTGAGGTCATGAGAAATGAGCAACCTTATGACAGCATCCCAAATTTTAGTGCTGCAGATGCCTTGCGTCTTACAG GAATTGGAAGAAATGAATTTATTGATATCATGAACAAATGCAGATCTAAGAAAATTATGTGGAAGCTGAACAAGTCAATTGCAAAAGAACTCTTACCCAC ACAACCTGTGGACTTTGCAATTGAACCATGGTGGGGAGTGTGTCTTGTCAATTTTACCTTGGAAGAATTTAAGAAACTTTCTGAAGAAGAGACGGCTACA ATTGATAAAATTTGCAAGGAGGAGGCTAATGCACTTATCCTCTTTGATCCTGATGTTGTAAAAGGCCTGTACCAACGAGGATTAATTTACTTTGATGTCC CTGTCTACCCCGATGATCGTTTTAAAGTTTCCAGGCTTGAAGGGTTTGTTTCCAACAGGGAGCAGTCCTACGAAGATCCTACTGAAGAGTTACTATATGC AGTCTTTGTTGTTTCAAGTGAGAATGCTACTGTTGCTGAACTGGCATCAACATTGCAGGCTGACCTGTCTCAGCTGCAGGCGGCTGCATCATTTGCTTGT AGATTAGGATGGGCAGATAAATTGATTGATCCAGGATCCATTCTTCAAGAAACAAGCATACCTGGGACTCCTAAAAACACTCTTGGTGATGAGGAAGATG CTTTTCATGCTAGTATGCGCTCAGCAAACATGTTCAACGATAGTGATTCTAGTCAGCATGGAGATCTTACAGTGACAGAATACTCCGGACCACGTTCCAA CCACACTCAAGTTGCTTTTATTGTTGATGCTAATATAACATCTTATCTCATGATGGGGTCTGTTTCACCAGGCTTAAAATCCCATGCTGTAACCTTATAT GAAGCAGGGAAGTTGGGTCATGCTAGCATTGCAGATCTCTGCAAGGATCTGAGTACCTTAGAAGGAGCAAAGTTTGAGGGTGAATTGCAGGAATTTGCAA ATCATGCCTTTAGCCTCCGTTGTGTCCTGGAATGCCTCCTATCAGGTGGGGTTGCTGCTGATGTAAAAGTGGAGGAAGCTTGCAATAAGATGGGCACAGC AGCTTCAAGCATTGATGAGGCTACATCTTTGATAGCTGATGTCGCTGTGTCTGAAAATTCAGAAAATATTGGGGCTGATGAAGTGAAAATAGACAATGAT GATTCCATGAATTCAATTACGCCTGAAGCTGGTTCTGTTTTGGCTAACCTTGTTTCTGGAAGTACTGATGATGACACCACTTCTGTTATTTTATCTGAAG ACATAAATTCATCAACTGAGGTCTCCAAATCAGATCAAGATGTCCAGAATGATGATAAACTTATTCCATTTGGAGGGTCTGATGTTGGAGAAGGAACTTT AAAGAGGAGAAGGGATTATCGTGTGGATATTCTCCGCTGTGAAAGTTTGGCTGCTCTAGCACCATCAACTTTAGATTCATTATTTCTCCGTGACTATGAT ATTGTTGTGTCTATAGTTCCTCTCCCTCATTCAGCAGTTCTTCCTGGACCAAAAGGTCCGATCCACTTTGGTCCTCCTTCACATTCATCCTTGACTCCAT GGATGAAGTTGGTGCTTTATTCAACTGTGGGTAGGGGGCCTTTGTCAGTTGTTCTGATGAAAGGGCAATCTTTACGTTTGCTTCCTGCACCATTGGCTGG CTGTGAGAAAGCCCTTATATGGTCCTGGGATGGTTCAACAATTGGAGGGTTGGGAGGCAAGTTCGAGGGAAATTTGGTCAAGGGAAGTATACTTTTACAT TGTCTAAATTCACTTCTTAAATACTCAGCTGTCCTGGTGCAGCCTCTCAGTAAGTATGACCTTGATGAATCAGGAAGGGTCATTACTGTAGATGTACCAT TGCCCCTCAACAACTCAGATGGTTCCATTGTTTGTGTGGGGAATGAACTGGGTCTCTGTGAAGAGGAAAGTTTGAAACTGAACACTTTGTTAACCAATCT AACACACACGATGGAGTTACCAACTATTGGTTACATTCGCCTGTTAAAGCTTTTCAGTGAAAGAGAATCAGACCACTTTGCACCTAGTGATAAAAAATAT GAATGGGTCCCACTAAGTGTGGAATTTGGAATCCCCCTTTTTAGTCCAAAATTAAGCAACAATATATGTAAAAGGGTTGTTGCATCAGAATTGCTTCAAT CAGATACACTTACTGAACACTATGAGGCCATGCAAGGCTTACGAAAAAGGTTGCGTGATGTCTGTGCAGAGTACCAGGCAACAGGTCCTGCTGCAAAACT TCTGTACCAGAAAGAGCAATCGAAGGAGTCACCTCGGCAACTCATGAACTATGCCAGTGGAAGATGGAATCCCCTAGTGGATCCATCTTCTCCCATTTCG GGAGCCTTGAGTGAGCATCAGAGACTAAAACTTGCCAATCGACAACGATGCCGAACTGAAGTCCTAAGTTTTGATGGTAGCATTTTAAGATCATATGCTC TAACTCCAGTATATGAGGCTGCCACAAGGCCCATTGAAGAAACCCCAATGGTGAAATCTACAAAAGCTGATCCTGATGAAGCTGATAGTAGAGAAGTAAT TCTTCCTGGTGTGAATCTAATTTTTGATGGTTCTGAACTGCATCCCTTCGACATAGGGGCTTGCCTGCAGGCTCGTCAACCGGTTTCTTTAATAGCTGAA GCTGCGGCAGCCTCAGCTTCTACTTCAATTAAATAG
AA sequence Show only first row Show all	>Potri.002G100800.5 pacid=42778022 polypeptide=Potri.002G100800.5.p locus=Potri.002G100800 ID=Potri.002G100800.5.v4.1 annot-version=v4.1 MQRAPVTIEEQLILKAIKEECPWENLPKRLQATLNSKDEWHRRVIEHCIKKRLQWNSCFARKVCKEGEYYEDMMRYLRKNLALFPYHLADYVCRVMRLSP FRYYCDMIFEVMRNEQPYDSIPNFSAADALRLTGIGRNEFIDIMNKCRSKKIMWKLNKSIAKELLPTQPVDFAIEPWWGVCLVNFTLEEFKKLSEEETAT IDKICKEEANALILFDPDVVKGLYQRGLIYFDVPVYPDDRFKVSRLEGFVSNREQSYEDPTEELLYAVFVVSSENATVAELASTLQADLSQLQAAASFAC RLGWADKLIDPGSILQETSIPGTPKNTLGDEEDAFHASMRSANMFNDSDSSQHGDLTVTEYSGPRSNHTQVAFIVDANITSYLMMGSVSPGLKSHAVTLY EAGKLGHASIADLCKDLSTLEGAKFEGELQEFANHAFSLRCVLECLLSGGVAADVKVEEACNKMGTAASSIDEATSLIADVAVSENSENIGADEVKIDND DSMNSITPEAGSVLANLVSGSTDDDTTSVILSEDINSSTEVSKSDQDVQNDDKLIPFGGSDVGEGTLKRRRDYRVDILRCESLAALAPSTLDSLFLRDYD IVVSIVPLPHSAVLPGPKGPIHFGPPSHSSLTPWMKLVLYSTVGRGPLSVVLMKGQSLRLLPAPLAGCEKALIWSWDGSTIGGLGGKFEGNLVKGSILLH CLNSLLKYSAVLVQPLSKYDLDESGRVITVDVPLPLNNSDGSIVCVGNELGLCEEESLKLNTLLTNLTHTMELPTIGYIRLLKLFSERESDHFAPSDKKY EWVPLSVEFGIPLFSPKLSNNICKRVVASELLQSDTLTEHYEAMQGLRKRLRDVCAEYQATGPAAKLLYQKEQSKESPRQLMNYASGRWNPLVDPSSPIS GALSEHQRLKLANRQRCRTEVLSFDGSILRSYALTPVYEAATRPIEETPMVKSTKADPDEADSREVILPGVNLIFDGSELHPFDIGACLQARQPVSLIAE AAAASASTSIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G35220			unknown protein		Potri.002G100800 [exp]	0	1
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Potri.013G128500 [exp]	2.82	0.7150
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.010G211100 [exp]	3.16	0.7385
AT1G20760			Calcium-binding EF hand family...		Potri.005G253000 [exp]	3.87	0.7154
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Potri.005G033700 [exp]	5.09	0.6681
AT5G14720			Protein kinase superfamily pro...		Potri.001G349300 [exp]	5.47	0.7022
AT5G04550			Protein of unknown function (D...		Potri.006G117000 [exp]	8.48	0.6687
AT3G55030		PGPS2	phosphatidylglycerolphosphate ...		Potri.010G214900 [exp]	11.22	0.6680
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.009G075700 [exp]	12.24	0.6616
AT1G04140			Transducin family protein / WD...		Potri.002G254700 [exp]	18.33	0.6790
AT1G61210		DWA3	DWD hypersensitive to ABA 3, T...		Potri.011G045500 [exp]	27.83	0.6065

Compare expression of checked genes

Potri.002G100800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.