Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09020 1111 / 0 ATISA3, ISA3 isoamylase 3 (.1) AT2G39930 547 / 0 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) AT1G03310 360 / 1e-111 ATISA2, ISA2, DBE1, BE2 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) AT5G04360 103 / 2e-22 ATPU1 ,ATLDA PULLULANASE 1, limit dextrinase (.1) AT3G20440 64 / 4e-10 EMB2729, BE1 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) AT5G03650 57 / 6e-08 SBE2.2 starch branching enzyme 2.2 (.1) AT2G36390 54 / 4e-07 SBE2.1, BE3 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G132500 [exp] 573 / 0 AT2G39930 1217 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.006G070800 [exp] 568 / 0 AT2G39930 1212 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.002G219900 [exp] 369 / 4e-115 AT1G03310 919 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Potri.010G229300 [exp] 96 / 5e-20 AT5G04360 1399 / 0.0 PULLULANASE 1, limit dextrinase (.1) Potri.001G359200 [exp] 65 / 2e-10 AT3G20440 1352 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Potri.006G115100 [exp] 54 / 3e-07 AT5G03650 1303 / 0.0 starch branching enzyme 2.2 (.1) Potri.005G251000 [exp] 50 / 7e-06 AT5G03650 828 / 0.0 starch branching enzyme 2.2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036474 [exp] 1014 / 0 AT4G09020 1005 / 0.0 isoamylase 3 (.1) Lus10021586 [exp] 580 / 0 AT2G39930 1211 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10017150 [exp] 382 / 3e-124 AT2G39930 723 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10000661 [exp] 345 / 1e-106 AT1G03310 848 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Lus10027999 [exp] 328 / 3e-100 AT1G03310 833 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2) Lus10038675 [exp] 108 / 7e-24 AT5G04360 1200 / 0.0 PULLULANASE 1, limit dextrinase (.1) Lus10017149 [exp] 97 / 1e-22 AT2G39930 296 / 3e-96 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10000912 [exp] 66 / 1e-10 AT3G20440 1315 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10023878 [exp] 57 / 6e-08 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10014382 [exp] 56 / 1e-07 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00128 [poplar] [flax] Alpha-amylase Alpha amylase, catalytic domain CL0369 [poplar] [flax] GHD PF02922 [poplar] [flax] CBM_48 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Representative CDS sequence Show only first row Show all	>Potri.002G100900.2 pacid=42780055 polypeptide=Potri.002G100900.2.p locus=Potri.002G100900 ID=Potri.002G100900.2.v4.1 annot-version=v4.1 ATGCTTCATCAATCACTTCCGCTCCTCTGTGATTCCAAAATTGCTGACAGCATACTTCTCTCTGTCTCACATTTCTCAAACAACAACAACAACAACAGTA TCGGCTCTTCTCGTGTTCTCGATGTGGGATTGAAATTCAGTAAACAATCATCCGGCGGCGGCAGCAGTGGGCGAGGATTCTCCAGCAAGGCTGGAGCCAA GACCACTACAACACCTAATGTTTACGGTCGTCGTGCTCAAGAAAGTGTGCTTGAGCAGGAAGAAGCACCTCAAAAGTTGGGATTTAAAACATTCCCAGGT CAAGCATTTCCATTTGGTGTTTCACAAGTTGAAAATGGGATCAATTTTGCTATATTTTCGCAGCACGCCACTGCTGTTACACTTTGCTTATCACTCCCTC ACAGGGGAAAGTCTGAAAGGACGGATGGTGGAATGATTGAGGTGGCTTTGGATCCCAAAGTTAATAAAACGGGAGACATTTGGCACATATGCATTGAGGA TTTACCACGGGACGACGTGCTTTATGGTTATAGGATAGATGGTCCTCGAGATTGGCGTCAAGGACATCGATTTGATAGCAGCATCATGCTTATTGATCCT TATGCTAAGCTAGTTGAAAGTCGCCGATTTTTTGGTGATGCCAGCCGTAAGCTGTCAAAATTTTATGGAACTTATGATTTTGACAGCTTGCCTTTTGATT GGGGTGATGACTACAAGCCTCCAAATATACCAGAGAAAGATCTTGTTATATATGAAATGAATGTCCGTGCGTTTACAGTTGATAAATCCAGTGGCTTGGA TCCAAGCATACGTGGAAGTTACCTTGGCGTAATTGAGAAGATCCCACATCTTCTAGAGCTTGGTGTCAATGCAGTGGAGCTGCTGCCCGTGTTTGAATTT GATGAATTTGAGTTTCAGAGGCGCCCAAATCCCAGAGATCACATGATCAATACATGGGGCTATTCAACAATAAATTTCTTTGCTCCTATGAATCGGTATG CTAGTAGAGGTGGTGGACCTCGTAATGCATCTCGGGAGTTCAAGGAAATGGTTAAAGCCTTGCATGGTGCCGGAATTGAGGTTATTTTGGATGTAGTCTT TAACCATACAAATGAGGCTGATGATAAAAATCCTTTTACAACTTCATTTCGCGGAATCGATAATAAGGTTTATTACATGGTTGACCTCAGCAATAATGGC CAGTTGCTGAATTTCTCTGGATGTGGGAACACATTAAACTGTAATCATCCTGTGGTCATGGAGCTCATCCTTGACAGCTTAAGACACTGGGTCATTGAAT ATCATGTGGATGGATTTAGATTTGACCTTGCCAGTGTACTTTGCCGAGGAACAGATGGTTCTCCACTTGACGCTCCCCCAATTATTAGGGCAATTGCAAA AGATTCCATCCTGTCAAGATGTAAAATTATTGCAGAGCCTTGGGATTGTGGAGGCCTTTATCTGGTTGGAAATTTTCCAAATTGGGACAGATGGGCTGAA TGGAATGGCAAGTACCGTGATGACATAAGAAAATTTATTAAGGGTGATTCTGGTATGAAAGGAAGTTTCGCCACCCGGGTTGCTGGATCTGCTGACCTTT ACAGAGCTAATAAGCGCAAGCCTTGTCATAGTGTTAATTTTGTTATTGCACACGATGGATTCACGCTGCGTGATCTTGTTTCATACAATTTCAAGCACAA TGATGCTAATGGAGAAGGTGGAAATGATGGATGCAATGACAATTTTAGCTGGAATTGTGGATTTGAAGGAGAAACTGATGATCATAATATTAAAGCTTTG CGCTTCAGGCAGATGAAAAACTTCCATTTAGCATTAATGATATCTCAGGGAACACCAATGATGCTTATGGGGGACGAATATGGACACACTCGCTATGGAA ATAACAACAGTTATGGGCATGACACCTCTATTAACAATTTCCAGTGGGGGCTCTTGGATGCAGAAAAGAGTAGTCACTTCAGGTTCTTCTCAGAGGTCAT AAAGTTTCGACAGACACATGGAGTATTTACTCATGACAATTTTCTCAGCGAAAATGATGTGACTTGGCATGAGAACAACTGGGAGAATCACGAAAGCAAA TTTCTTGCATTTACGCTTCATGACCAAAACGGAGGAGATATCTATTTGGCTTTCAATGCTCATGACTATATTGTTAAAGTTTCAATACCCCCACCACCAC CCAAGAGGCGCTGGCTTCGTGTGGTAGACACCAATTTTGAATCTCCGGATGACTTTGTTCCTCAAGGTCTCCCACGCATTGGAAGCACCTATAATGTGGC CCCACACTCTTCAATTCTTCTTGAAGCTAAAAACTGA
AA sequence Show only first row Show all	>Potri.002G100900.2 pacid=42780055 polypeptide=Potri.002G100900.2.p locus=Potri.002G100900 ID=Potri.002G100900.2.v4.1 annot-version=v4.1 MLHQSLPLLCDSKIADSILLSVSHFSNNNNNNSIGSSRVLDVGLKFSKQSSGGGSSGRGFSSKAGAKTTTTPNVYGRRAQESVLEQEEAPQKLGFKTFPG QAFPFGVSQVENGINFAIFSQHATAVTLCLSLPHRGKSERTDGGMIEVALDPKVNKTGDIWHICIEDLPRDDVLYGYRIDGPRDWRQGHRFDSSIMLIDP YAKLVESRRFFGDASRKLSKFYGTYDFDSLPFDWGDDYKPPNIPEKDLVIYEMNVRAFTVDKSSGLDPSIRGSYLGVIEKIPHLLELGVNAVELLPVFEF DEFEFQRRPNPRDHMINTWGYSTINFFAPMNRYASRGGGPRNASREFKEMVKALHGAGIEVILDVVFNHTNEADDKNPFTTSFRGIDNKVYYMVDLSNNG QLLNFSGCGNTLNCNHPVVMELILDSLRHWVIEYHVDGFRFDLASVLCRGTDGSPLDAPPIIRAIAKDSILSRCKIIAEPWDCGGLYLVGNFPNWDRWAE WNGKYRDDIRKFIKGDSGMKGSFATRVAGSADLYRANKRKPCHSVNFVIAHDGFTLRDLVSYNFKHNDANGEGGNDGCNDNFSWNCGFEGETDDHNIKAL RFRQMKNFHLALMISQGTPMMLMGDEYGHTRYGNNNSYGHDTSINNFQWGLLDAEKSSHFRFFSEVIKFRQTHGVFTHDNFLSENDVTWHENNWENHESK FLAFTLHDQNGGDIYLAFNAHDYIVKVSIPPPPPKRRWLRVVDTNFESPDDFVPQGLPRIGSTYNVAPHSSILLEAKN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G09020		ATISA3, ISA3	isoamylase 3 (.1)		Potri.002G100900 [exp]	0	1
AT3G55760			unknown protein		Potri.008G159500 [exp]	1.00	0.8432
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Potri.002G018400 [exp]	5.47	0.7789
AT3G54440			glycoside hydrolase family 2 p...		Potri.003G196500 [exp]	7.21	0.7830
AT5G41620			unknown protein		Potri.002G166600 [exp]	17.88	0.7478
AT1G72180			Leucine-rich receptor-like pro...		Potri.019G078400 [exp]	21.42	0.7232
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Potri.005G196700 [exp]	22.29	0.7747	GI.1
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Potri.010G105700 [exp]	28.72	0.7326	FKF1.1
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Potri.001G284600 [exp]	32.86	0.7165
AT2G01630			O-Glycosyl hydrolases family 1...		Potri.008G133200 [exp]	33.22	0.7258
AT5G07670			RNI-like superfamily protein (...		Potri.014G059100 [exp]	34.07	0.7712

Compare expression of checked genes

Potri.002G100900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.