Plant FIBer expression Database

Potri.002G101101 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G161100
[exp]
41 / 3e-05 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G101101.1 pacid=42779221 polypeptide=Potri.002G101101.1.p locus=Potri.002G101101 ID=Potri.002G101101.1.v4.1 annot-version=v4.1
ATGGCTTACAAAATCTGGGCGCCTTTGATGCTTCTGGCTCTCTTTGCCGGTTCAGCTTTGGCTCAGGCACCAGGAGCTGCACCAACAGCTTCACCAGCTA
CATCACCATCTCCTGCACCCGCTGCTCCTACAACTCCACCCCCCGCTCCAACCCCCTCTCCATCAGTCTCTGCTCCAACCCCCTCTACTTCTCCGGCCCC
CTCTACTGCTCCATCCACTCCTCCTCCTTCATCTCCAGCCAGCTCACCACCTTCTCCCTCTACCCCTGCCCCCTCCGTATCCATTCCTCCAAGCGCCGCT
TCCCCTCCATCTCCAAGCGCCGCCGGCTTGAACAAAGCCACCGTGGCTGGTGCTTTGATTGGAGTCGCTGGTGTGTGGTCTTTGTTGCTGTAG
AA sequence
>Potri.002G101101.1 pacid=42779221 polypeptide=Potri.002G101101.1.p locus=Potri.002G101101 ID=Potri.002G101101.1.v4.1 annot-version=v4.1
MAYKIWAPLMLLALFAGSALAQAPGAAPTASPATSPSPAPAAPTTPPPAPTPSPSVSAPTPSTSPAPSTAPSTPPPSSPASSPPSPSTPAPSVSIPPSAA
SPPSPSAAGLNKATVAGALIGVAGVWSLLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G101101
[exp]
0 1
AT1G21326 VQ motif-containing protein (.... Potri.005G189300
[exp]
1.00 0.9527
Potri.019G014354
[exp]
2.44 0.9423
Potri.019G014368
[exp]
3.16 0.9372
AT2G45550 CYP76C4 "cytochrome P450, family 76, s... Potri.001G025200
[exp]
5.29 0.9374
AT2G18550 HD HB-2, ATHB21 homeobox-2, homeobox protein 2... Potri.005G126100
[exp]
6.00 0.9288
Potri.015G143650
[exp]
6.92 0.9269
AT3G21360 2-oxoglutarate (2OG) and Fe(II... Potri.010G131200
[exp]
9.48 0.9234
AT3G60530 GATA GATA4 GATA transcription factor 4 (.... Potri.014G058600
[exp]
10.48 0.9233
Potri.009G114800
[exp]
12.72 0.9149
AT3G61850 DOF DAG1, AtDof3,7 dof affecting germination 1, D... Potri.002G174300
[exp]
13.85 0.9167

Potri.002G101101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.