Plant FIBer expression Database

Potri.002G101400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G09060 190 / 8e-58 unknown protein
AT1G14680 176 / 7e-53 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036467
[exp]
258 / 4e-84 AT4G09060 271 / 9e-89 unknown protein
Lus10041137
[exp]
223 / 7e-71 AT4G09060 224 / 1e-71 unknown protein
PFAM info
Representative CDS sequence
>Potri.002G101400.1 pacid=42776904 polypeptide=Potri.002G101400.1.p locus=Potri.002G101400 ID=Potri.002G101400.1.v4.1 annot-version=v4.1
ATGGATCTACTTCAAGAAATCGACGATTACATAAAAGAAACAATCAATGAATCCTTAGGCCTACCAGTCTCTGCTCGCACTCTCCAATTAAAGCTTCGCG
TTTACGAGGATGCTTATTTCCGTCTCCGTGACCAACACCTTCTTCTCCTCGGCAAATTTCGCCAAAAAGACATCCTTATTGACCGTGCCAAGGCGGAGGC
GAATATGAATGCTGCGGCGATAAAGAAATTTGTGGAGGAAAATCAAAGATTGGCAGCGGAGTGTGCGAATTTGGTGAGTCAGTGTAACAAATGGGAAAGA
GAGTGTTCGCTTTATGACAATGATAGAGAGGCTTTAATGGAGTTTGGGAATGAGGCGGATGAGAGGGCAAGAGAGGCGGAGGAGAGAGCAAAAGAGGCAG
AGATTAGGGTTCGTGAATTGGAGGAGGAGTCGGGGAAGGCTTTGGAGGAATTGCAGTTTTATAAGCACAAGTGCCATACTCGTAGGGATGATTCATCTGC
TGAGAGCACTGATATGGAGGAGAATTCTCTTGAGTCCATTTTAGCAACAATGGTTGGTAAAGATGAAGTGGAATCTGGTCAAGCTTATTTGGAAGCGAAC
AGTGGCTATGAGTCATGTCAAAATTTGCTGAAAATGTGGAATAGTTTGAGGCCTTCAACACGGAAAGTATTATCACTAGCTGCTAAAGCAAGGACACTTC
AGCAAGATAAGGAACATCTCAGGATTAATCTTACTAGAGCTGAAGAGGAGGTCAAGTTATTATTTGAAGAGAACAATATACTGGATGGGGAGAACAAAAG
GTTATTGAGGCGAGAACACAGAGAACAGAACTTTGATGGTTCTGGCGGAAAGCATAGTAGCAGTGCTTCTGCTAAGAGGAGCAAGCGAAAATCAAGTTCG
AGGAGTTTCGCTGTTGAGAGCAAGATTGATTCTGAGGATATAGATTCATTGAGACAACCACTGTCACCATTGCGTCACAACTCCCCTGGTTGTAGACTGT
ATAAGCAGTAG
AA sequence
>Potri.002G101400.1 pacid=42776904 polypeptide=Potri.002G101400.1.p locus=Potri.002G101400 ID=Potri.002G101400.1.v4.1 annot-version=v4.1
MDLLQEIDDYIKETINESLGLPVSARTLQLKLRVYEDAYFRLRDQHLLLLGKFRQKDILIDRAKAEANMNAAAIKKFVEENQRLAAECANLVSQCNKWER
ECSLYDNDREALMEFGNEADERAREAEERAKEAEIRVRELEEESGKALEELQFYKHKCHTRRDDSSAESTDMEENSLESILATMVGKDEVESGQAYLEAN
SGYESCQNLLKMWNSLRPSTRKVLSLAAKARTLQQDKEHLRINLTRAEEEVKLLFEENNILDGENKRLLRREHREQNFDGSGGKHSSSASAKRSKRKSSS
RSFAVESKIDSEDIDSLRQPLSPLRHNSPGCRLYKQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G09060 unknown protein Potri.002G101400
[exp]
0 1
AT3G12530 PSF2 PSF2 (.1.2) Potri.010G203600
[exp]
1.00 0.8793
AT3G25980 MAD2 MITOTIC ARREST-DEFICIENT 2, DN... Potri.010G055100
[exp]
2.00 0.8219 MAD2.2
AT4G18060 SH3 domain-containing protein ... Potri.011G077500
[exp]
8.12 0.8361
AT3G56250 unknown protein Potri.013G083700
[exp]
11.09 0.8339
AT4G01710 ARPC5, CRK CROOKED, ARP2/3 complex 16 kDa... Potri.014G045200
[exp]
12.64 0.8023 Pt-CRK.1
AT5G45660 unknown protein Potri.011G076600
[exp]
17.60 0.7972
AT4G02830 unknown protein Potri.005G208800
[exp]
18.16 0.8016
AT2G45790 ATPMM phosphomannomutase (.1) Potri.014G080300
[exp]
18.33 0.7590
AT1G29200 O-fucosyltransferase family pr... Potri.004G058900
[exp]
18.76 0.7722
AT3G08710 TRXH9, ATH9 THIOREDOXIN TYPE H 9, thioredo... Potri.016G138800
[exp]
19.44 0.7691

Potri.002G101400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.