Plant FIBer expression Database

Potri.002G101600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G101500
[exp]
77 / 4e-17 AT2G14095 55 / 5e-09 unknown protein
Potri.017G050000
[exp]
48 / 9e-07 AT2G14095 105 / 6e-28 unknown protein
Potri.001G310100
[exp]
46 / 5e-06 AT2G14095 109 / 1e-29 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025500
[exp]
42 / 0.0001 AT2G14095 64 / 7e-12 unknown protein
Lus10012704
[exp]
39 / 0.001 AT2G14095 54 / 5e-09 unknown protein
PFAM info
Representative CDS sequence
>Potri.002G101600.4 pacid=42778485 polypeptide=Potri.002G101600.4.p locus=Potri.002G101600 ID=Potri.002G101600.4.v4.1 annot-version=v4.1
ATGATGTCTGTAACAAGAGCAATGTTTGCCTACAGTTCCGTTAGCCAGATATTTCTACCACCTAGTCCGGTATCTGATAGCACTTCGGAAATCTCAAAAC
TCAAATTCAAAAGCCAGTTTCTTAGAAATCAAAGGCTGCAAGTTTTCAGCACCTCTCTGAAACTGCTCTATGCAAGAAATACAAAGATGGAAATGGCTGT
ATACAATAGTCTTGGAACAGGACCTGCTCATCCTTCTGCTCCTTCTCCTTGTTTAATACAACTTTATGGTGATCTACGTACTAGCAGGAAGGGTTGGGTT
CTGGGAATGCTAATATCAATAATTCTACCCTTTTGTAGAAACAAATGGGGGGCATTACTGTTGATAAAAGACAAAGTTGAACAAGTGGTGGAGATAGCAG
ATCACGTTGCAGACATTGTAGAAGAGGTGGCTGAGGAAGTGGGGAAGGTAGCTGAAGAAGTTGCCGATCATCTGCCGGAAGGTGGGAAACTTCAACAAGT
GGCCACATTTGTTGAAAACGTAGCGAAAGAAACAGCGAAGGATGCTAATGTAGTAGATGAAATAATTGAAAAGATTAAAAATCAGGTGGAAGAGGTGGAA
AAGGAGGTGGAAGAGGAGGTGGAGTCTTTCTCGGAGCAACTCACGGAGCAAGCCAATGGAAAATCCGAAGAATCAAAAGGCTGA
AA sequence
>Potri.002G101600.4 pacid=42778485 polypeptide=Potri.002G101600.4.p locus=Potri.002G101600 ID=Potri.002G101600.4.v4.1 annot-version=v4.1
MMSVTRAMFAYSSVSQIFLPPSPVSDSTSEISKLKFKSQFLRNQRLQVFSTSLKLLYARNTKMEMAVYNSLGTGPAHPSAPSPCLIQLYGDLRTSRKGWV
LGMLISIILPFCRNKWGALLLIKDKVEQVVEIADHVADIVEEVAEEVGKVAEEVADHLPEGGKLQQVATFVENVAKETAKDANVVDEIIEKIKNQVEEVE
KEVEEEVESFSEQLTEQANGKSEESKG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G101600
[exp]
0 1
AT2G45760 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE... Potri.002G155300
[exp]
1.41 0.9536 BAP2.1
AT2G26530 AR781 Protein of unknown function (D... Potri.014G034900
[exp]
3.00 0.9394 AR781.2
AT1G76490 HMGR1, HMG1, At... 3-HYDROXY-3-METHYLGLUTARYL COA... Potri.004G208500
[exp]
3.16 0.9510 HMGR3.4
AT2G26190 calmodulin-binding family prot... Potri.006G147900
[exp]
6.92 0.9204
AT2G47485 unknown protein Potri.004G095200
[exp]
7.74 0.9375
AT2G47485 unknown protein Potri.004G095150
[exp]
8.06 0.9374
AT2G01670 ATNUDT17 nudix hydrolase homolog 17 (.1... Potri.008G134000
[exp]
8.48 0.9161
AT2G39420 alpha/beta-Hydrolases superfam... Potri.010G212200
[exp]
12.12 0.8750
AT2G41180 SIB2 sigma factor binding protein 2... Potri.019G013300
[exp]
12.24 0.9166
AT4G32180 ATPANK2 pantothenate kinase 2 (.1.2.3) Potri.010G041800
[exp]
12.68 0.9236

Potri.002G101600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.