Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72210 257 / 3e-84 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G22490 247 / 1e-80 bHLH bHLH094 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G24140 174 / 6e-51 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46810 166 / 2e-48 bHLH bHLH070 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G01460 164 / 3e-48 bHLH bHLH057 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G46690 164 / 7e-48 bHLH bHLH071 beta HLH protein 71 (.1) AT3G61950 159 / 1e-46 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G65320 157 / 8e-46 bHLH bHLH099 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G06120 127 / 2e-35 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G53210 95 / 6e-22 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G039800 [exp] 278 / 6e-92 AT1G72210 231 / 5e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G025900 [exp] 275 / 5e-91 AT1G72210 243 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G097600 [exp] 239 / 4e-77 AT1G72210 167 / 2e-49 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G093200 [exp] 219 / 1e-69 AT5G46690 191 / 8e-59 beta HLH protein 71 (.1) Potri.001G141100 [exp] 216 / 2e-68 AT5G46690 222 / 6e-71 beta HLH protein 71 (.1) Potri.005G071100 [exp] 209 / 1e-65 AT1G72210 177 / 1e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G314400 [exp] 182 / 5e-54 AT3G24140 399 / 2e-137 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G180300 [exp] 179 / 4e-53 AT2G46810 228 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G106300 [exp] 176 / 6e-52 AT2G46810 247 / 9e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015902 [exp] 274 / 6e-90 AT1G72210 235 / 7e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000332 [exp] 234 / 9e-75 AT1G22490 221 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029950 [exp] 231 / 9e-74 AT1G72210 226 / 4e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001271 [exp] 197 / 8e-61 AT1G72210 194 / 1e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009475 [exp] 192 / 5e-59 AT1G72210 199 / 8e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10016680 [exp] 177 / 1e-51 AT3G24140 358 / 2e-120 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010101 [exp] 163 / 2e-49 AT2G46810 199 / 1e-63 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007139 [exp] 170 / 3e-49 AT3G24140 308 / 2e-101 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012603 [exp] 160 / 4e-48 AT2G46810 202 / 4e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010503 [exp] 121 / 2e-32 AT3G06120 191 / 4e-61 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G101900.1 pacid=42777004 polypeptide=Potri.002G101900.1.p locus=Potri.002G101900 ID=Potri.002G101900.1.v4.1 annot-version=v4.1 ATGGAACTAGAGGCAATTGTGTACTCTCAAGATCCATTTACTTATGGCTGCAAGGATTCTTACTCCTTGGCAGGAGGAGGAGCTTGGGGCTATGATTTTG ATCAGTTGCAAGAAGATGATAAAGCTTTTCTTGGGATTCTTGAAAATAACAACATGGAGCAACAAGGTCTCCATGCAAGCTGGGATTCATCATCACTTTC ATTGATGCAACAAGAAAAAGAATGGGATCACAATTCCTCTTCACCCGGGACTTGCAATGTTGATCAATCTCTCCAAGGAATACTGTTTCCTGCAATAATG GAACCTGCACCAGTGACAACAACAAACAGGAGAAAACGGAGACGCACCAAGAGCTCCAAGAATAAAGAAGAAATTGAGAGCCAGAGAATGACTCACATTG CTGTTGAACGCAACCGTAGAAAACAGATGAATGAGTATCTTGCTGTGCTTAGGTCTTTGATGCCTCCTTCTTATGTTCAAAGAGGTGACCAAGCATCGAT AATTGGAGGTGCCATTAACTTCGTGAAGGAGCTAGAGCAGCTCTTGCAGACCATGGGAACTAATAAAAAGAACAAGCAACAACCCGACGATAATGGTTTC CCTTCACGGCTATTTGCTGAGTTCTTCACCTTCCCACAGTATTCGACTCGTGCATCTCAGCCTTCGGTAACGGCAGATGAATCAGTGGCTGATCAGAACC AGCGGGCTTTAGGGGACATAGAAGTGACAATGGTGGAGAGCCATGCCAATCTCAAAATTCTATCAAAGAAACGGCCAGGACAGCTCTTGAAGTTGATGGT GGGGTTGCAAAACCTAAGGCTCAGTATTCTTCACCTCAATGTCACCACTGTTGATCAAATGGTTCTCTATTCAGTTAGTGTCAAGGTTGAAGAAGGATGT CATCTGAATACAGTGGATGAGATTGCAGCTGCTGTTAATCACATGCTATACAGGATTGAAGAAGCAACTGCTTTCAGCTGA
AA sequence Show only first row Show all	>Potri.002G101900.1 pacid=42777004 polypeptide=Potri.002G101900.1.p locus=Potri.002G101900 ID=Potri.002G101900.1.v4.1 annot-version=v4.1 MELEAIVYSQDPFTYGCKDSYSLAGGGAWGYDFDQLQEDDKAFLGILENNNMEQQGLHASWDSSSLSLMQQEKEWDHNSSSPGTCNVDQSLQGILFPAIM EPAPVTTTNRRKRRRTKSSKNKEEIESQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQTMGTNKKNKQQPDDNGF PSRLFAEFFTFPQYSTRASQPSVTADESVADQNQRALGDIEVTMVESHANLKILSKKRPGQLLKLMVGLQNLRLSILHLNVTTVDQMVLYSVSVKVEEGC HLNTVDEIAAAVNHMLYRIEEATAFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.002G101900 [exp]	0	1
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102200 [exp]	5.29	0.8752
AT1G09750			Eukaryotic aspartyl protease f...		Potri.002G104600 [exp]	8.24	0.8515
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102700 [exp]	9.05	0.8535
AT1G53580		GLY3, GLX2-3, E...	GLYOXALASE 2-3, ETHE1-LIKE, gl...		Potri.001G380100 [exp]	12.12	0.8360
AT1G55790			Domain of unknown function (DU...		Potri.011G165600 [exp]	15.96	0.8179
AT2G44930			Plant protein of unknown funct...		Potri.017G024300 [exp]	19.67	0.8289
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Potri.012G103500 [exp]	22.69	0.8490	NAC062
AT3G14250			RING/U-box superfamily protein...		Potri.003G187700 [exp]	23.68	0.7869
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.013G149000 [exp]	24.67	0.8093
AT2G36540			Haloacid dehalogenase-like hyd...		Potri.010G244400 [exp]	27.74	0.8179

Compare expression of checked genes

Potri.002G101900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.