Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65380 437 / 1e-151 MATE efflux family protein (.1) AT5G44050 407 / 4e-140 MATE efflux family protein (.1) AT5G10420 403 / 3e-138 MATE efflux family protein (.1) AT1G33110 332 / 2e-110 MATE efflux family protein (.1.2) AT3G21690 330 / 1e-109 MATE efflux family protein (.1) AT1G47530 328 / 5e-109 MATE efflux family protein (.1) AT1G33100 328 / 7e-109 MATE efflux family protein (.1) AT1G61890 321 / 3e-106 MATE efflux family protein (.1) AT1G11670 317 / 2e-104 MATE efflux family protein (.1) AT1G33080 315 / 7e-104 MATE efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G102100 [exp] 548 / 0 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.007G010200 [exp] 463 / 5e-162 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.005G160700 [exp] 403 / 2e-138 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.019G063500 [exp] 341 / 9e-114 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 332 / 9e-111 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.002G161200 [exp] 324 / 2e-108 AT4G00350 657 / 0.0 MATE efflux family protein (.1) Potri.014G153100 [exp] 320 / 6e-106 AT3G21690 704 / 0.0 MATE efflux family protein (.1) Potri.013G069600 [exp] 319 / 2e-105 AT3G03620 533 / 0.0 MATE efflux family protein (.1) Potri.015G139400 [exp] 317 / 5e-105 AT3G03620 548 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015903 [exp] 492 / 5e-173 AT5G65380 641 / 0.0 MATE efflux family protein (.1) Lus10020952 [exp] 488 / 3e-172 AT5G65380 629 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 454 / 2e-158 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10002645 [exp] 453 / 4e-158 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10024945 [exp] 412 / 1e-138 AT5G65380 651 / 0.0 MATE efflux family protein (.1) Lus10020951 [exp] 362 / 3e-122 AT5G65380 543 / 0.0 MATE efflux family protein (.1) Lus10003869 [exp] 359 / 3e-121 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2) Lus10042130 [exp] 335 / 9e-112 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10026323 [exp] 332 / 3e-110 AT1G47530 525 / 0.0 MATE efflux family protein (.1) Lus10042344 [exp] 327 / 2e-108 AT1G47530 521 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.002G102000.2 pacid=42778327 polypeptide=Potri.002G102000.2.p locus=Potri.002G102000 ID=Potri.002G102000.2.v4.1 annot-version=v4.1 ATGTTGGGCATCTACATGCAAAGATCTTGGGTTGTTCTGTTCTTGTGTTGTTTCTTGCTTTTGCCATTTTACGTTTTTGCCACTCCACTTCTCAAACGTC TAGGTCAGGCTGATGAAGTGGCAAAGATGGCGGGAGCGGTGGCTTTATGGTTGATACCTTTGCACTTTAGCTTTGCATTTCTGTTCCCATTGCGGACGTT CTTGCAGAGCCAGCTAAAGAATCAAGTGACTGCCTGGGTTTCCTTGGTGAGCTTGGGGATCAATGCCTTGACAAGTTGGCTCTTCATTTACGAGCTCGAT TTCGGAGTTGTTGGCGTGGCTATTGCTTTGGATATATCCTGGTGGGCTTTAACACTTGGGTTATTCGTTTATTGTTCTTGTGGTCGGTGCCCTTCTACTT GGACTGGGTTTTCCGTCCAAGCCTTTTCTGGGCTATGGGAATTTGTCAAGCTCTCTGTTGCTTCTGGGGTCATGCTCTGCTTGGAGAATTGGTACTATAG AATACTTATAATAATGACTGGGCACTTGAAAAACTCGACACTTGCTGTGGATGCTCTCTCAGTTTGCATGGGTACTATTGGGTGGGAACTCATGATTCCC CTGGCCTTCTATGCAGCTGCGGGCGTGAGAGTGTCCAATGAATTAGGAGCTGGGAATAGTAAAGCAGCAAAATTTGCAACAATGGTTTCAGTGGCACAAA CAACTATAACTGGACTTGTGTTGTGCGTGCTTATCATGCTATTGAAGAACAAGATTGCTTTGGCATTCACTTCTGACGCTGATGTTATCCATGAGGTTGA TAGCCTCTCGCCCCTCTTAGCCATTAGTATTCTCCTTAATAATGTTCAACCGGTTCTGTCAGGAGTGGCCGTAGGATCAGGGTCGCAAACAAAGATCGCG TATGTAAATCTTGGCTGCTACTACATTATTGGGCTCCCTCTTGGATTTCTTATGGGATGGGTCTTCAAGTTGGGTATTAAGGGCATCTGGTGCGGGATGA TTCTTGGCGGAACTTTTACTCAAACTGTTACCTTGGCCATCATAACGATGAAATTTAACTGGGATAAAGAGGCTGAAAAGGCTCGGAATCGCGTGGACAA ATGGTCAAAACCCAGGCCAACGGGATGA
AA sequence Show only first row Show all	>Potri.002G102000.2 pacid=42778327 polypeptide=Potri.002G102000.2.p locus=Potri.002G102000 ID=Potri.002G102000.2.v4.1 annot-version=v4.1 MLGIYMQRSWVVLFLCCFLLLPFYVFATPLLKRLGQADEVAKMAGAVALWLIPLHFSFAFLFPLRTFLQSQLKNQVTAWVSLVSLGINALTSWLFIYELD FGVVGVAIALDISWWALTLGLFVYCSCGRCPSTWTGFSVQAFSGLWEFVKLSVASGVMLCLENWYYRILIIMTGHLKNSTLAVDALSVCMGTIGWELMIP LAFYAAAGVRVSNELGAGNSKAAKFATMVSVAQTTITGLVLCVLIMLLKNKIALAFTSDADVIHEVDSLSPLLAISILLNNVQPVLSGVAVGSGSQTKIA YVNLGCYYIIGLPLGFLMGWVFKLGIKGIWCGMILGGTFTQTVTLAIITMKFNWDKEAEKARNRVDKWSKPRPTG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65380			MATE efflux family protein (.1...		Potri.002G102000 [exp]	0	1
AT3G30340			nodulin MtN21 /EamA-like trans...		Potri.014G108500 [exp]	4.69	0.9669
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Potri.001G189900 [exp]	8.00	0.9646
					Potri.005G168401 [exp]	8.83	0.9631
AT4G37840		HKL3	hexokinase-like 3 (.1)		Potri.007G009300 [exp]	10.58	0.9563
AT4G08300			nodulin MtN21 /EamA-like trans...		Potri.005G176200 [exp]	13.63	0.9621
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.005G228000 [exp]	15.55	0.9592
AT1G79480			Carbohydrate-binding X8 domain...		Potri.006G008200 [exp]	15.58	0.9600
					Potri.007G034000 [exp]	16.24	0.9602
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.002G035000 [exp]	17.66	0.9585
					Potri.007G034101 [exp]	17.88	0.9598

Compare expression of checked genes

Potri.002G102000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.