Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65380 636 / 0 MATE efflux family protein (.1) AT5G44050 589 / 0 MATE efflux family protein (.1) AT5G10420 573 / 0 MATE efflux family protein (.1) AT1G33100 466 / 3e-161 MATE efflux family protein (.1) AT1G33110 463 / 4e-160 MATE efflux family protein (.1.2) AT1G33090 447 / 6e-154 MATE efflux family protein (.1) AT1G47530 446 / 1e-153 MATE efflux family protein (.1) AT1G33080 444 / 1e-152 MATE efflux family protein (.1.2) AT3G21690 432 / 7e-148 MATE efflux family protein (.1) AT1G61890 427 / 4e-146 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G010200 [exp] 655 / 0 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.005G160700 [exp] 575 / 0 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.002G102000 [exp] 546 / 0 AT5G65380 437 / 7e-152 MATE efflux family protein (.1) Potri.013G069700 [exp] 471 / 2e-163 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.019G063500 [exp] 447 / 1e-153 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.013G069600 [exp] 431 / 1e-147 AT3G03620 533 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 430 / 6e-147 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.013G069400 [exp] 429 / 1e-146 AT3G03620 527 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 429 / 1e-146 AT3G21690 646 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015903 [exp] 690 / 0 AT5G65380 641 / 0.0 MATE efflux family protein (.1) Lus10020952 [exp] 681 / 0 AT5G65380 629 / 0.0 MATE efflux family protein (.1) Lus10002645 [exp] 649 / 0 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10012741 [exp] 649 / 0 AT5G65380 705 / 0.0 MATE efflux family protein (.1) Lus10024945 [exp] 604 / 0 AT5G65380 651 / 0.0 MATE efflux family protein (.1) Lus10020951 [exp] 513 / 1e-179 AT5G65380 543 / 0.0 MATE efflux family protein (.1) Lus10003869 [exp] 490 / 8e-171 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2) Lus10042130 [exp] 444 / 1e-152 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10010035 [exp] 432 / 2e-148 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 428 / 7e-146 AT3G26590 666 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.002G102100.1 pacid=42777652 polypeptide=Potri.002G102100.1.p locus=Potri.002G102100 ID=Potri.002G102100.1.v4.1 annot-version=v4.1 ATGGGCACAATCAGCAGAAATGGCGATGATCTCCATGATACCTTGTTACCAGATGATCCAGTCAACCACGATGTCGGTCAAGAAAATCAAGACCCGCTTG CGTCTAGAGTCTGGACTGAGACAAAGAAGCTATGGGAAATCGTTGGGCCTGCTATCTTCAGCAGGGTGGCCACTTTCTCCATGAACATCATCACCCAAGC TTTCGCTGGCCATCTTGGTGATGTTGAACTTGCTGCAATCTCCATAGCCAATACTGTTATTGTTGGCTTCAATTTCGGACTGCTGCTAGGAATGGCAAGC GCTTTAGAGACTTTATGTGGGCAAGCTTTTGGTGCAAAGAGATACCATATGTTGGGAATTTACATGCAAAGATCATGGATTGTTCTATTCTTCTGTTGTT TCTTGCTCTTGCCTTTTTACGTTTTTGCCGCTCCACTTCTCAAATTCTTAGGCCAGCCCGACGACGTCGCAGAGCAGTCAGGATTGGTGGCTTTATGGTT GATACCGCTACACTTTAGCTTTGCATTTCAGTTCCCATTGCAGAGGTTCTTGCAGAGCCAGCTAAAGAATCAAGTGATAGCCTGGATTTCTTTGGCGAGT CTAGGGGTCAATGTGTTGACGAGTTGGCTCCTTGTTTATGTGCTTGATTTTGGAGTTATTGGTGCTGCAATTGCTTTGGATATATCTTGGTGGGTTATAG TTATTGGATTGTTCATATATACTTCTTGTGGTTGGTGTCCTTCTACTTGGACTGGGTTTTCGGCACAAGCCTTTTGTGGCCTCTGGGAATTTGTCAAACT ATCTGCTGCTTCTGGAGTCATGCTTTGCCTGGAGAATTGGTACTACAGAATACTGATATTAATGACAGGGTACTTTAAGAACGCAACGCTTGCTGTGGAT GCCTTGTCAGTCTGCATGAGTATTAATGGGTGGGAGATCATGATTCCTTTGGCCTTCTTCGCAGCTACAGGAGTACGGGTGTCTAATGAGTTAGGAGCTG GAAATGGCAAGGGAGCAAAATTTGCAACTATAGTATCCGTGGTGCAATCATCTATAGTTGGACTTATATTTTGCGTAATTATCATGTCGCTACACAACAA GATTGCATTAATATTCACCTCTAGCTCCAGCGTTATCCAGGAGGTTGATAACCTGGCCCTGCTTCTAGCCATTACTATTCTTCTTAACAGCGTTCAACCA GTTTTATCAGGAGTTGCGGTAGGAGCAGGATGGCAAGCATTGGTTGCATATGTAAACCTTGGCTGCTACTACATTATTGGGCTCCCACTTGGATTTCTAA TAGGATGGGTCTTCAAGTTGGGTGTTAAGGGCATCTGGGGTGGGATGATTTTTGGTGGAACCGCCGTTCAAACGGTGATATTGGTCATCATAACCATGAG ATCCGACTGGGATAAGGAGGCGGAAAAGGCACGCATTAATGTAAACAAGTGGTCGCAATCGAAGCCAGATGTTCAATGA
AA sequence Show only first row Show all	>Potri.002G102100.1 pacid=42777652 polypeptide=Potri.002G102100.1.p locus=Potri.002G102100 ID=Potri.002G102100.1.v4.1 annot-version=v4.1 MGTISRNGDDLHDTLLPDDPVNHDVGQENQDPLASRVWTETKKLWEIVGPAIFSRVATFSMNIITQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMAS ALETLCGQAFGAKRYHMLGIYMQRSWIVLFFCCFLLLPFYVFAAPLLKFLGQPDDVAEQSGLVALWLIPLHFSFAFQFPLQRFLQSQLKNQVIAWISLAS LGVNVLTSWLLVYVLDFGVIGAAIALDISWWVIVIGLFIYTSCGWCPSTWTGFSAQAFCGLWEFVKLSAASGVMLCLENWYYRILILMTGYFKNATLAVD ALSVCMSINGWEIMIPLAFFAATGVRVSNELGAGNGKGAKFATIVSVVQSSIVGLIFCVIIMSLHNKIALIFTSSSSVIQEVDNLALLLAITILLNSVQP VLSGVAVGAGWQALVAYVNLGCYYIIGLPLGFLIGWVFKLGVKGIWGGMIFGGTAVQTVILVIITMRSDWDKEAEKARINVNKWSQSKPDVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65380			MATE efflux family protein (.1...		Potri.002G102100 [exp]	0	1
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Potri.002G105900 [exp]	2.23	0.9277
					Potri.008G019250 [exp]	3.31	0.9471
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Potri.006G120600 [exp]	4.24	0.9362	GT4.2
AT5G57630		CIPK21, SnRK3.4	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G096042 [exp]	4.24	0.9356
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.014G103000 [exp]	5.74	0.9139	Pt-ATHB.5
AT3G55290			NAD(P)-binding Rossmann-fold s...		Potri.016G035200 [exp]	6.16	0.9067
AT1G21550			Calcium-binding EF-hand family...		Potri.005G183300 [exp]	7.21	0.9304
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Potri.016G103100 [exp]	7.21	0.8931
AT2G40095			Alpha/beta hydrolase related p...		Potri.010G189600 [exp]	9.48	0.9069
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Potri.009G133500 [exp]	12.12	0.8583

Compare expression of checked genes

Potri.002G102100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.