Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33600 466 / 8e-162 unknown protein AT4G33590 463 / 1e-160 unknown protein AT3G18180 45 / 0.0001 Glycosyltransferase family 61 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G112500 [exp] 504 / 3e-176 AT4G33590 564 / 0.0 unknown protein Potri.017G048300 [exp] 500 / 6e-175 AT4G33600 573 / 0.0 unknown protein Potri.015G042200 [exp] 42 / 0.0008 AT3G18180 441 / 3e-151 Glycosyltransferase family 61 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041131 [exp] 566 / 0 AT4G33590 443 / 3e-153 unknown protein Lus10001351 [exp] 436 / 2e-149 AT4G33590 519 / 0.0 unknown protein Lus10036462 [exp] 300 / 3e-100 AT4G33590 218 / 5e-69 unknown protein Lus10036463 [exp] 195 / 3e-60 AT4G33590 162 / 3e-48 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04577 [poplar] [flax] DUF563 Protein of unknown function (DUF563)
Representative CDS sequence Show only first row Show all	>Potri.002G102300.1 pacid=42778665 polypeptide=Potri.002G102300.1.p locus=Potri.002G102300 ID=Potri.002G102300.1.v4.1 annot-version=v4.1 ATGGATGTGGAAAAGACCACCAAAACATTTACCAAAAAGAAGAGTTCATGTCACTCAAACAAGATCATCACATGTGTTTTTCTACTGCTGCTGATTCCCA TACTCGTGCATTTGCAAGCTTCCCCTTTCTATTTCTTTTCCTCTCCCACTGCTACTTCACGAGCTTTCTTCAACAAATGGAAAGGAATAGCACTTGACGC CTCCGCTGGTCCTTCTATCCCCAAAAACAGTGACGGTTTGATCTCAAAGCTCCGAGAGTCAGTCACTTTCCTACCCCTGAAAGATCTGAGGTTCGCTGAA ACTGCCATGGAGGGGAACACTTGGTTTATGAGCTCCTTGAACGACACCCATGAGGCGAACGAAGCTGAATACCTCTATTTCCCTTCACAAATGTCCAAGG GGCGGCTTCTATGCATCAAAGGACGTCACGCGACAGATGGCACCAAGAACTCATACGCCTTGGTTTGGCCAGAAGCTCTTCCAGACTCTGCCACACTCAT GAAGGGCTTGACCTTTGTGTCAGACACATTCTATGATTATGGCAATTTGTGGCATGGATTGACTGGTATGGCGCCCTTTGTTGGTTGGTCTATGAAAAAT AAGTGCCTGAATCCTACAAGATGGGTACTGTTCCATTGGGGAGAGTTGAGGTCTAAAATGGGGTCATGGCTACAACACCTAATGCAAGCTAACTTTGGAG ATGTTAAAATTGAGGGATTTGGAGGAGATGGGCCGTACTGCTTTGAGAAGGCAGTTGTGATGAGACATAACGAGGGAAGTATGGGAAAGGAAAGGAAGCT TCAGGTTTTCGATTTGTTGCGATGTAATGCTAGAAGATTTTGCGGTATAAGCCCTGAAGGGAAGGGACAAGAGACCAATGAAAGAGGTGAACCGATTATA AGGCTGACGCTGCTCATGAGGACAGGTTCAAGGTCATTCAAGAATGCAAGCGCTGTGACAGACATATTTGCACGGGAGTGTGCAAAGGTGGAAGGCTGCA CATTCAAGGTAGCTCAGTCAGAAAATCTAAGCTTCTGCGACCAGGTCAGAGTAATGACTTACACCGATGTTGTCGCATCCCCACATGGTGCTCAATTGAC AAACATGCTTTTCATGGACAGAAACAGTAGTGTGATGGAGTTCTTCCCTAAAGGATGGTTAGAGCTTGCCGGAGTGGGTCAGTACGCACATCACTGGATG GCAGACCAATCTGGCATGAATCACCGAGGTGCATGGTGGGATCCACTGGACAAAAAGGAATGTCCATTTCCTCAACAAGATCTAGATTGCTTTAATTTTT ACAAAAATGGGAAAGTTGGTCACAATGAAACCCATTTTGCAGAGTGGGCAAGAATTGTTCTCGACCAAGTTAGGATAAGCAAGATGCAAATTGCCACTAG GAGTCCCACTAACAAGCCACAGCCAAACTCAATTGCCTGCAAGTGCTAG
AA sequence Show only first row Show all	>Potri.002G102300.1 pacid=42778665 polypeptide=Potri.002G102300.1.p locus=Potri.002G102300 ID=Potri.002G102300.1.v4.1 annot-version=v4.1 MDVEKTTKTFTKKKSSCHSNKIITCVFLLLLIPILVHLQASPFYFFSSPTATSRAFFNKWKGIALDASAGPSIPKNSDGLISKLRESVTFLPLKDLRFAE TAMEGNTWFMSSLNDTHEANEAEYLYFPSQMSKGRLLCIKGRHATDGTKNSYALVWPEALPDSATLMKGLTFVSDTFYDYGNLWHGLTGMAPFVGWSMKN KCLNPTRWVLFHWGELRSKMGSWLQHLMQANFGDVKIEGFGGDGPYCFEKAVVMRHNEGSMGKERKLQVFDLLRCNARRFCGISPEGKGQETNERGEPII RLTLLMRTGSRSFKNASAVTDIFARECAKVEGCTFKVAQSENLSFCDQVRVMTYTDVVASPHGAQLTNMLFMDRNSSVMEFFPKGWLELAGVGQYAHHWM ADQSGMNHRGAWWDPLDKKECPFPQQDLDCFNFYKNGKVGHNETHFAEWARIVLDQVRISKMQIATRSPTNKPQPNSIACKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33600			unknown protein		Potri.002G102300 [exp]	0	1
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Potri.017G021330 [exp]	12.60	0.7492
AT4G27220			NB-ARC domain-containing disea...		Potri.001G425500 [exp]	13.52	0.7275
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003350 [exp]	17.08	0.7324
AT4G27220			NB-ARC domain-containing disea...		Potri.001G429660 [exp]	18.70	0.7184
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.004G088600 [exp]	28.28	0.7051
AT4G27190			NB-ARC domain-containing disea...		Potri.001G446650 [exp]	32.31	0.6773
AT5G47020			unknown protein		Potri.001G148300 [exp]	32.49	0.7099
AT4G27190			NB-ARC domain-containing disea...		Potri.001G445700 [exp]	35.83	0.7142
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145562 [exp]	36.74	0.6922
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Potri.008G082400 [exp]	44.00	0.6869

Compare expression of checked genes

Potri.002G102300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.