Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14600 163 / 4e-53 Target SNARE coiled-coil domain protein (.1) AT1G29060 153 / 3e-49 Target SNARE coiled-coil domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G159600 [exp] 201 / 3e-68 AT4G14600 194 / 3e-65 Target SNARE coiled-coil domain protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008723 [exp] 169 / 2e-55 AT4G14600 211 / 6e-72 Target SNARE coiled-coil domain protein (.1) Lus10020947 [exp] 168 / 5e-55 AT4G14600 209 / 3e-71 Target SNARE coiled-coil domain protein (.1) Lus10041130 [exp] 161 / 3e-52 AT4G14600 189 / 4e-63 Target SNARE coiled-coil domain protein (.1) Lus10036461 [exp] 105 / 2e-30 AT4G14600 109 / 5e-32 Target SNARE coiled-coil domain protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G102400.2 pacid=42778565 polypeptide=Potri.002G102400.2.p locus=Potri.002G102400 ID=Potri.002G102400.2.v4.1 annot-version=v4.1 GGCGCTGCTCCTTACAGATCAAGAGAGGGACTTAGCACGAGACCCGTGGCGAGCTCCGATGAAATACAATTGCGGATTGACCCGATCCATTGGGATTTGG ACGATGAGATCACTGGCCTTCGTAGCCAAGTTAGGCAATTAAGAAACGTGGCTCAAGAGATAGAATCAGAAGCAAAATATGAGAAGGATTTCTTAGAGAC TCTGCAAATGACTGTGATGAAAGCTCAAGTTGGTGTGAAGAACAACCTTAGGAAATTAAACAAGAGTATCATCAAGAATGGTGGAAACCATATTGTTCAT GTGGTTGTTTTTGCACTGTTTGGTTTCTTGGTGGTTTATCTGTGGTCCAAAATGTCTAGAAGATGA
AA sequence Show only first row Show all	>Potri.002G102400.2 pacid=42778565 polypeptide=Potri.002G102400.2.p locus=Potri.002G102400 ID=Potri.002G102400.2.v4.1 annot-version=v4.1 GAAPYRSREGLSTRPVASSDEIQLRIDPIHWDLDDEITGLRSQVRQLRNVAQEIESEAKYEKDFLETLQMTVMKAQVGVKNNLRKLNKSIIKNGGNHIVH VVVFALFGFLVVYLWSKMSRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14600			Target SNARE coiled-coil domai...		Potri.002G102400 [exp]	0	1
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.017G138401 [exp]	4.24	0.9447
AT1G17280		UBC34	ubiquitin-conjugating enzyme 3...		Potri.003G073100 [exp]	4.89	0.9306
AT5G65960			GTP binding (.1)		Potri.002G177100 [exp]	5.47	0.9230
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Potri.006G184500 [exp]	5.65	0.9261
AT2G37030			SAUR-like auxin-responsive pro...		Potri.016G091500 [exp]	10.24	0.9224
AT3G50590			Transducin/WD40 repeat-like su...		Potri.005G136300 [exp]	10.48	0.9242
AT1G32790		CID11	CTC-interacting domain 11 (.1....		Potri.001G448800 [exp]	10.95	0.9200
AT2G16790			P-loop containing nucleoside t...		Potri.019G048200 [exp]	10.95	0.8921
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Potri.005G220500 [exp]	13.41	0.8834
AT5G27830			unknown protein		Potri.005G024200 [exp]	15.29	0.8870

Compare expression of checked genes

Potri.002G102400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.