Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24380 334 / 2e-117 unknown protein AT5G65400 279 / 1e-95 alpha/beta-Hydrolases superfamily protein (.1) AT1G09280 79 / 4e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G027000 [exp] 217 / 7e-71 AT4G24380 211 / 4e-68 unknown protein Potri.005G011300 [exp] 72 / 2e-14 AT1G09280 773 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008722 [exp] 353 / 5e-125 AT4G24380 320 / 7e-112 unknown protein Lus10020946 [exp] 352 / 2e-124 AT4G24380 327 / 1e-114 unknown protein Lus10000004 [exp] 127 / 6e-38 AT4G24380 123 / 2e-37 unknown protein Lus10008045 [exp] 69 / 3e-13 AT1G09280 748 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF03959 [poplar] [flax] FSH1 Serine hydrolase (FSH1)
Representative CDS sequence Show only first row Show all	>Potri.002G102500.5 pacid=42778953 polypeptide=Potri.002G102500.5.p locus=Potri.002G102500 ID=Potri.002G102500.5.v4.1 annot-version=v4.1 ATGGGAAGTGAAGCTGAGATTCCTAGAAAGCCCAGGTTTTTATGCCTTCATGGATTTAGAACAAGCGGAGAAATTCTGAAGACACAAGTGCACAAGTGGC CTGAATCAGTGCTTCAAATGCTCGATCTTGTTTTTCTAGATGCCCCTTTTCCTAGCCAAGGAAAATCAGATGTGGAAGGAATCTTTGACCCTCCTTATTA TGAGTGGTTCCAATTTAACAAGGAATTCAGTGAATACACTAATTTTGATGAATGCCTTGCTTATATCGAGGATTTCATGATCAAGAACGGACCCTTCGAT GGCCTGCTTGGTTTTTCTCAGGGCGCAATTTTATCGTCTGGGCTTCCCGGATTGCAAGCGACGGGTGTGGCTCTAACCAAAGTGCCCAAAATAAAGTTTC TGATAATAATTGGAGGAGCTATGTTTAAGTCACCATCTGTGGCTGAGAAAGCATATGATTCCCCAATTGAATGCCCATCCCTCCACCTTTTAGGGGAGAC GGACTTCTTGAAGCAATATGGTATGGAACTCTTGAAATGTTGCGTAGACCCTGTTGTGATTCATCATCCTAAGGGTCATACGATACCAAGACTTGATGAA AAGGGTTCGGAAACCATGCTGAGCTTCATTGACAGAATTCAAAACATGTTACTAGACAAGTAG
AA sequence Show only first row Show all	>Potri.002G102500.5 pacid=42778953 polypeptide=Potri.002G102500.5.p locus=Potri.002G102500 ID=Potri.002G102500.5.v4.1 annot-version=v4.1 MGSEAEIPRKPRFLCLHGFRTSGEILKTQVHKWPESVLQMLDLVFLDAPFPSQGKSDVEGIFDPPYYEWFQFNKEFSEYTNFDECLAYIEDFMIKNGPFD GLLGFSQGAILSSGLPGLQATGVALTKVPKIKFLIIIGGAMFKSPSVAEKAYDSPIECPSLHLLGETDFLKQYGMELLKCCVDPVVIHHPKGHTIPRLDE KGSETMLSFIDRIQNMLLDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24380			unknown protein		Potri.002G102500 [exp]	0	1
AT5G48655			RING/U-box superfamily protein...		Potri.002G245500 [exp]	2.64	0.7934
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.014G080000 [exp]	3.74	0.8111
AT4G29905			unknown protein		Potri.008G007800 [exp]	6.00	0.7884
AT4G12410			SAUR-like auxin-responsive pro...		Potri.003G113100 [exp]	7.74	0.8558
AT5G62865			unknown protein		Potri.018G114200 [exp]	8.00	0.8017
AT5G50460			secE/sec61-gamma protein trans...		Potri.012G098400 [exp]	9.79	0.7710	SEC61.1
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G102900 [exp]	10.77	0.7328
AT5G63130			Octicosapeptide/Phox/Bem1p fam...		Potri.012G085000 [exp]	11.31	0.7575
AT2G30020			Protein phosphatase 2C family ...		Potri.009G073000 [exp]	12.72	0.8020	Pt-MP2.9
AT1G59600		ZCW7	ZCW7 (.1)		Potri.002G118300 [exp]	16.12	0.7502

Compare expression of checked genes

Potri.002G102500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.