Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49970 761 / 0 PDX3, ATPPOX HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2) AT2G46580 43 / 0.0002 Pyridoxamine 5'-phosphate oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G159500 [exp] 177 / 5e-53 AT5G49970 145 / 2e-41 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2) Potri.002G173800 [exp] 43 / 0.0002 AT2G46580 293 / 2e-102 Pyridoxamine 5'-phosphate oxidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000833 [exp] 769 / 0 AT5G64070 776 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Lus10002098 [exp] 763 / 0 AT5G49970 731 / 0.0 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2) Lus10030234 [exp] 44 / 0.0001 AT2G46580 275 / 2e-95 Pyridoxamine 5'-phosphate oxidase family protein (.1) Lus10005977 [exp] 42 / 0.0004 AT2G46580 274 / 1e-94 Pyridoxamine 5'-phosphate oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0336 [poplar] [flax] FMN-binding PF01243 [poplar] [flax] Putative_PNPOx Pyridoxamine 5'-phosphate oxidase CL0063 [poplar] [flax] NADP_Rossmann PF03853 [poplar] [flax] YjeF_N YjeF-related protein N-terminus CL0063 [poplar] [flax] PF10590 [poplar] [flax] PNP_phzG_C Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
Representative CDS sequence Show only first row Show all	>Potri.002G102600.2 pacid=42777684 polypeptide=Potri.002G102600.2.p locus=Potri.002G102600 ID=Potri.002G102600.2.v4.1 annot-version=v4.1 ATGACGATGGTGATTCGAAAGAGTAGCAGTAGAGCAATGACATGCTTATTTCTATCTCAATTACCTCCCACGCTCTCTCACCATAACCACTCCTTTTCCA TTTACAAATCCTGTCGCTCTCTCTCTAAAACTCCCTCGGATTTTCTAGGTTCAATCTGGTGTCCCACAGTCTGTGCAGCTCCTACAATTCGTTCATTTAG TTCAAAATTCAGCGAATCCAGCACCACCGCAAGAATGCAAAATCCAGAGTCCATATCATACCTAACTCAGCGAGAAGCTGCTGAAGTCGATGAGATTCTC ATGGGCCCGCTCGGCTTCAGCGTCGATCAGTTGATGGAATTGGCTGGATTGAGTGTTGCTACTTCAATAGCCGAGGTGTATAAACCTAGCGAATACAGTC GTGTTCTTGCAATCTGCGGTCCAGGGAATAATGGCGGTGATGGTTTAGTGGCAGCTCGTCACTTGCATCATTTTGGATACAAACCATCCGTTTGTTATCC AAAACGGACTCAAAAACCTCTTTATAATGGTCTTGTTACTCAGTTGGAATCACTGTCAGTCCCTTTCCTTTCAGTGGAGGATTTGCCTGTGGATTTGCCT GAAGATTTTGACATTCTAGTAGATGCAATGTTCGGGTTCTCATTCCATGGTTCCCCAAGACCACCTTTTGATGACCTAATCCAGAAGCTGGTGCAATTGT GTAATTTTGCTCAAAATCACCAAAAATCCCCTGTAACTGTGTCTGTGGATATTCCATCTGGATGGCATGTTGAAGAGGGTGATGTTAGTGGTGAGGGAGT TAAGCCTGATATGTTGGTTTCTTTGACTGCTCCAAAATTGTGCGCAAAGAAATTTACTGGTCCACACCACTTTCTAGGGGGTAGATTTGTCCCATCATCT ATTGTGGACAAATTTAAGCTGCATCTTCCACCTTATCCAGGAACTTCCATGTGTGTCAGGATTGGAAAGCCTCCACAAATTGATATATCAGCTCTCAGAC AAAACTATATTTCTCCAGAATTGCTTGAGGAGCAGGTGGCGGCTGACCCCATTGATCAGTTTCGTAAATGGTTTGACGAAGCATTGGCTGCTGGGTTGAG GGAACCAAATGCTATGGCCTTGTCAACTGTTGGAAAGGATGGAAAACCCTCATCAAGAATTGTGTTGTTGAAAGGAGTTGACAAGGATGGGTTTGTTTGG TACACCAATTATGAAAGTCAAAAGGCGCATGAATTATCCGAAAATCCCCATGCATCACTCCTCTTCTACTGGGATGGTCTTAATCGGCAGGTACGAGTGG AAGGATCTGTGCAGAAAGTTCCTGATGAGGAATCAGAACAGTACTTTCATAGCCGTCCTCGAGGGAGTCAAATTGGAGCAATAGCTAGCAAGCAGAGTAC TAGCATCCCTGGAAGGCATATTCTGCACCAAACATACAAAGAATTAGAGGAAAAATATTCTGATGGAAGTTTGATTCCAAAACCTAAACACTGGGGAGGG TACAGGCTTAAACCACAACTTTTCGAGTTTTGGCAAGGACAGCAGTCTCGTTTACATGACAGGTTGCAGTATATTCCTCAAGAAATTGATAGAAAGCTAG TTTGGAAGATTGTGCGGTTGGCTCCCTGA
AA sequence Show only first row Show all	>Potri.002G102600.2 pacid=42777684 polypeptide=Potri.002G102600.2.p locus=Potri.002G102600 ID=Potri.002G102600.2.v4.1 annot-version=v4.1 MTMVIRKSSSRAMTCLFLSQLPPTLSHHNHSFSIYKSCRSLSKTPSDFLGSIWCPTVCAAPTIRSFSSKFSESSTTARMQNPESISYLTQREAAEVDEIL MGPLGFSVDQLMELAGLSVATSIAEVYKPSEYSRVLAICGPGNNGGDGLVAARHLHHFGYKPSVCYPKRTQKPLYNGLVTQLESLSVPFLSVEDLPVDLP EDFDILVDAMFGFSFHGSPRPPFDDLIQKLVQLCNFAQNHQKSPVTVSVDIPSGWHVEEGDVSGEGVKPDMLVSLTAPKLCAKKFTGPHHFLGGRFVPSS IVDKFKLHLPPYPGTSMCVRIGKPPQIDISALRQNYISPELLEEQVAADPIDQFRKWFDEALAAGLREPNAMALSTVGKDGKPSSRIVLLKGVDKDGFVW YTNYESQKAHELSENPHASLLFYWDGLNRQVRVEGSVQKVPDEESEQYFHSRPRGSQIGAIASKQSTSIPGRHILHQTYKELEEKYSDGSLIPKPKHWGG YRLKPQLFEFWQGQQSRLHDRLQYIPQEIDRKLVWKIVRLAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49970		PDX3, ATPPOX	HOMOLOG OF YEAST PYRIDOXINE AU...		Potri.002G102600 [exp]	0	1
AT5G53000		TAP46	2A phosphatase associated prot...		Potri.012G016500 [exp]	6.48	0.9202
AT5G47830			unknown protein		Potri.014G024500 [exp]	8.00	0.9354
AT5G03420			5'-AMP-activated protein kinas...		Potri.006G123300 [exp]	9.11	0.9382
AT4G27940		ATMTM1	ARABIDOPSIS MANGANESE TRACKING...		Potri.015G022700 [exp]	9.16	0.9050
AT4G01200			Calcium-dependent lipid-bindin...		Potri.002G166400 [exp]	10.48	0.8978
AT3G30390			Transmembrane amino acid trans...		Potri.002G114300 [exp]	11.22	0.9266
AT1G01940			Cyclophilin-like peptidyl-prol...		Potri.002G149700 [exp]	15.96	0.9049
AT1G48040			Protein phosphatase 2C family ...		Potri.008G100700 [exp]	17.20	0.8620
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Potri.001G171000 [exp]	18.92	0.8533	Pt-ATPDAT.2
AT4G29330		DER1	DERLIN-1 (.1)		Potri.006G153000 [exp]	19.44	0.9177

Compare expression of checked genes

Potri.002G102600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.