Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49980 911 / 0 AFB5 auxin F-box protein 5 (.1) AT4G24390 886 / 0 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2) AT1G12820 601 / 0 IPS1, AFB3 auxin signaling F-box 3 (.1) AT3G26810 588 / 0 AFB2 auxin signaling F-box 2 (.1) AT3G62980 559 / 0 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) AT4G03190 550 / 0 ATGRH1, ATGER1, AFB1, GRH1 AUXIN SIGNALING F BOX PROTEIN 1, GRR1-like protein 1 (.1) AT2G39940 303 / 2e-94 COI1 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) AT4G15475 92 / 4e-19 F-box/RNI-like superfamily protein (.1) AT5G67250 59 / 5e-09 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT5G27920 59 / 6e-09 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G159300 [exp] 1144 / 0 AT5G49980 934 / 0.0 auxin F-box protein 5 (.1) Potri.004G033900 [exp] 602 / 0 AT1G12820 654 / 0.0 auxin signaling F-box 3 (.1) Potri.011G042400 [exp] 596 / 0 AT3G62980 649 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.017G061600 [exp] 578 / 0 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.001G323100 [exp] 578 / 0 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.002G207800 [exp] 567 / 0 AT3G62980 937 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.014G134800 [exp] 560 / 0 AT3G62980 947 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.008G064400 [exp] 288 / 9e-89 AT2G39940 794 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.010G192900 [exp] 280 / 1e-85 AT2G39940 790 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018426 [exp] 602 / 0 AT3G62980 634 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10035160 [exp] 595 / 0 AT3G26810 894 / 0.0 auxin signaling F-box 2 (.1) Lus10020086 [exp] 589 / 0 AT3G62980 644 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10006738 [exp] 587 / 0 AT1G12820 647 / 0.0 auxin signaling F-box 3 (.1) Lus10018425 [exp] 545 / 0 AT3G62980 593 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10011262 [exp] 536 / 0 AT3G62980 588 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10035161 [exp] 493 / 5e-169 AT3G26810 770 / 0.0 auxin signaling F-box 2 (.1) Lus10031991 [exp] 422 / 1e-142 AT3G26810 635 / 0.0 auxin signaling F-box 2 (.1) Lus10011260 [exp] 352 / 4e-116 AT3G62980 397 / 2e-134 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10014836 [exp] 297 / 2e-92 AT2G39940 827 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G102700.1 pacid=42776788 polypeptide=Potri.002G102700.1.p locus=Potri.002G102700 ID=Potri.002G102700.1.v4.1 annot-version=v4.1 ATGATCACCAACAAAAAGCCTAGATCATCAGACACTGACTCTAATTATATGAGAGACGATCGAACTGACATGTCAGAAGACGACGACCGATCTCCGCCGT CGGATTCAATCGCCAACGACTCTTGCCCAACACGGACCTGCACTCCTGGGTCTGGGTCGGGTTCGTCTTCCATCCCCGAATACTCAGCTCCATACCCGGA CCAAGTCCTCGAAAACGTCTTAGAAAACGTTCTCTGGTTCTTAACCTCACGTAAGGACCGAAACGCTGCGTCATTGGTTTGTAGGTTATGGTACCGGGTC GAGGCTATGACCCGATCCGATTTGTTTATCGGTAACTGCTACGCGGTGTCTCCAGAACGCGCTACGTCGCGGTTTACCCGAATCCGTTCGGTGACGCTAA AAGGAAAGCCAAGGTTTGCTGATTTTAACCTGATGCCGCCTAATTGGGGAGCCCACTTCGCGCCTTGGGTCTCTGCTATGGCAAAGGCTTACCCTTGGTT AGAGAAGATTCATTTGAAGAGGATGTCAGTGACGGATGATGATCTGGCTTTGCTTGCGGAGTCATTTTCGGGGTTCAAAGAGCTCGCACTTGTTTGCTGT GATGGGTTTGGTACTAGTGGACTGGCTGTTGTGGCTAGTAAGTGCAGGCAACTCAAAGTGCTTGATCTGATTGAATCAGAAGTATCGGATGATGAAGTGG ATTGGATTTTGTGTTTTCCAGATACCGAAACATGTCTTGAATCCCTGATTTTAGATTGTGTAGAATGTCCCATTGATTTTGATGCACTGGAGAGGCTGGT GACTAGGTCCCCATCACTTAAGAAACTTAGGCTAAACAGGTTCGTTTCAATTGGGCAACTATACCGTTTAATGGTTCGAGCACCGCAGCTCACACATCTT GGGACAGGCTCATTTAGCCAATCGGAGGATGTGGCTCAAGGTGAACTGGAACTAGATTATGGCTCTGCGTTTGCTGCTTGCAAATCATTAGTTTGCCTAT CTGGATTCAGGGAAATCATTCCAGATTATTTGCCTGCAATATACCCCGTCTGCGCCAATCTCACTTCACTGAACTTTAGTTATGCAAATATCAGCGCAGA ACAGCTCAAACCAATTATAAGCAATTGCCACAAGCTTCAGACTTTCTGGGTTCTTGATTCAATATGCGATGAAGGACTTCAGGCTGTGGCTACAACTTGC AAGGAACTACGTGAGCTTCGGGTTTTCCCTTTTGAAGCTAGGGAGGACATCGAGGGCCCTGTTTCTGAAGTGGGCCTCCAAGCGATTTCAGAGGGTTGCA GGAAGCTCCAATCTATTTTGTATTTTTGCCCGCGGATGACAAATGCTGCTGTTATAGCTATGTCAAAGAACTGCCCAGACCTTGTGGCCTTCCGTCTCTG CATAATGGGACTCCACCAGCCTGATCATGTCACTGGAGAACCTATGGATGAAGGGTTTGGAGCCATTGTCATGAATTGCAAGAAGCTCACTCGACTTGCA GTATCTGGTTTATTGACTGATAGAGCTTTTGCTTACATTGGAAAATATGGGAAGATTGTAAGGACATTATCGGTTGCTTTTGCTGGTGATAGTGACATGG GGTTGAAGTATGTGCTTGAGGGCTGTCCCAAATTACAGAAGCTTGAGATTAGAGACAGTCCATTCGGGGATGCAGCTCTACTTTCTGGTCTGCACCACTA TTACAATATGAGATTCCTTTGGATGTCCGCTTGCAAGTTGTCCCATCAGGGATGCCAACAGATTGCTCAAGCATTGCCTCACCTGGTGGTGGAAGTGATT AAGCATGAAGATAATGTGGACATGGATGAGTATGTTGATACATTGTACATGTATCGGTCTCTTGCAGGGAGAAGACATGATGTGCCACGATTTGTTTCCA TCTTGTAA
AA sequence Show only first row Show all	>Potri.002G102700.1 pacid=42776788 polypeptide=Potri.002G102700.1.p locus=Potri.002G102700 ID=Potri.002G102700.1.v4.1 annot-version=v4.1 MITNKKPRSSDTDSNYMRDDRTDMSEDDDRSPPSDSIANDSCPTRTCTPGSGSGSSSIPEYSAPYPDQVLENVLENVLWFLTSRKDRNAASLVCRLWYRV EAMTRSDLFIGNCYAVSPERATSRFTRIRSVTLKGKPRFADFNLMPPNWGAHFAPWVSAMAKAYPWLEKIHLKRMSVTDDDLALLAESFSGFKELALVCC DGFGTSGLAVVASKCRQLKVLDLIESEVSDDEVDWILCFPDTETCLESLILDCVECPIDFDALERLVTRSPSLKKLRLNRFVSIGQLYRLMVRAPQLTHL GTGSFSQSEDVAQGELELDYGSAFAACKSLVCLSGFREIIPDYLPAIYPVCANLTSLNFSYANISAEQLKPIISNCHKLQTFWVLDSICDEGLQAVATTC KELRELRVFPFEAREDIEGPVSEVGLQAISEGCRKLQSILYFCPRMTNAAVIAMSKNCPDLVAFRLCIMGLHQPDHVTGEPMDEGFGAIVMNCKKLTRLA VSGLLTDRAFAYIGKYGKIVRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALLSGLHHYYNMRFLWMSACKLSHQGCQQIAQALPHLVVEVI KHEDNVDMDEYVDTLYMYRSLAGRRHDVPRFVSIL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49980		AFB5	auxin F-box protein 5 (.1)		Potri.002G102700 [exp]	0	1
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Potri.005G228200 [exp]	4.89	0.6723
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Potri.004G032700 [exp]	5.83	0.7434
AT1G61690			phosphoinositide binding (.1)		Potri.004G030500 [exp]	9.48	0.7067
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Potri.008G037800 [exp]	12.24	0.6538
AT3G22590		PHP, CDC73	PLANT HOMOLOGOUS TO PARAFIBROM...		Potri.008G155000 [exp]	15.49	0.6560	PAFE902
AT5G19420			Regulator of chromosome conden...		Potri.003G197600 [exp]	18.52	0.6512
AT3G06400		CHR11	chromatin-remodeling protein 1...		Potri.008G205600 [exp]	25.09	0.6411
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.012G080200 [exp]	26.22	0.6494
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Potri.002G159300 [exp]	26.24	0.6347
AT4G22350			Ubiquitin C-terminal hydrolase...		Potri.016G014000 [exp]	38.17	0.6052

Compare expression of checked genes

Potri.002G102700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.