Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10940 212 / 5e-65 ASG2 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) AT4G35140 73 / 2e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT4G38480 71 / 1e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT3G45620 71 / 2e-14 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 50 / 1e-07 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08560 49 / 5e-07 transducin family protein / WD-40 repeat family protein (.1.2) AT4G02730 49 / 5e-07 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G43920 45 / 1e-05 transducin family protein / WD-40 repeat family protein (.1) AT5G23430 44 / 2e-05 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G47990 42 / 7e-05 SWA1, EDA13, EDA19 SLOW WALKER1, EMBRYO SAC DEVELOPMENT ARREST 19, EMBRYO SAC DEVELOPMENT ARREST 13, transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G158300 [exp] 258 / 3e-82 AT5G10940 1080 / 0.0 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.009G139000 [exp] 76 / 3e-16 AT4G35140 602 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G178700 [exp] 73 / 3e-15 AT4G35140 538 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002700 [exp] 52 / 5e-08 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.005G148500 [exp] 52 / 5e-08 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 50 / 2e-07 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 47 / 2e-06 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G194100 [exp] 46 / 5e-06 AT5G43920 697 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 45 / 6e-06 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040538 [exp] 181 / 3e-58 AT5G10940 291 / 7e-95 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Lus10033290 [exp] 75 / 6e-16 AT3G45620 557 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10034751 [exp] 75 / 7e-16 AT3G45620 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023993 [exp] 71 / 1e-14 AT4G35140 557 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10025088 [exp] 71 / 1e-14 AT4G35140 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 53 / 1e-08 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 53 / 2e-08 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10011916 [exp] 49 / 7e-07 AT5G43920 557 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10022847 [exp] 48 / 9e-07 AT5G43920 550 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10014674 [exp] 47 / 2e-06 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.002G103066.1 pacid=42777650 polypeptide=Potri.002G103066.1.p locus=Potri.002G103066 ID=Potri.002G103066.1.v4.1 annot-version=v4.1 ATGCTAATTGACGGAATATCTGTAGCCCCAGGTGATAGTTACTCGGGGAATGCCTTATGTGTTAGGTTTGAAGAATGCTGTGACCCCTTTCTCCTGGAAA AGTTAATCCGTCATCCTGCCATTTTTCTTAGGAGTTCTCTAGTTCTGTGTGTCCAGACAGGTGATTACGTGGCCAGTGGAAGTGATGATGGTAGATGGTT TGTTTGGGAGAAGCAAACTGGTAGATTGATAAAAATGCTTCTTGGAGATGAAGCTGTTGTGAACTGTGTCCAGTGTCATCCATTTGATTGTGTTGTGGCA ACCAGTGGGATTGATAGCACCATAAAGATCTGGACTCCAAGTGCTTCAGTTCCATCAATTGTGGCTTGGGGAGCAGCTGGACCAGAAATTTCTAATGTGT TGGAAGCCATGGAAAGCAACCAACGAAGGTTATGCCATAATCGTGAAGCTATCCTCCCCTTTGAGCTTCTAGAGCGGTTTCGGATGCATGAATTCACTGA AGGAACTTTGCACCCTTTTGAGTGTGCTCAGAGCTAA
AA sequence Show only first row Show all	>Potri.002G103066.1 pacid=42777650 polypeptide=Potri.002G103066.1.p locus=Potri.002G103066 ID=Potri.002G103066.1.v4.1 annot-version=v4.1 MLIDGISVAPGDSYSGNALCVRFEECCDPFLLEKLIRHPAIFLRSSLVLCVQTGDYVASGSDDGRWFVWEKQTGRLIKMLLGDEAVVNCVQCHPFDCVVA TSGIDSTIKIWTPSASVPSIVAWGAAGPEISNVLEAMESNQRRLCHNREAILPFELLERFRMHEFTEGTLHPFECAQS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.002G103066 [exp]	0	1
AT2G07340		PFD1	PREFOLDIN 1 (.1.2)		Potri.018G149200 [exp]	3.00	0.7963
AT3G49490			unknown protein		Potri.002G230100 [exp]	3.87	0.7924
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.005G054900 [exp]	15.16	0.8142
					Potri.008G124350 [exp]	15.87	0.7370
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.002G103132 [exp]	16.24	0.7500
AT5G36930			Disease resistance protein (TI...		Potri.019G017082 [exp]	27.12	0.7947
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G148266 [exp]	30.21	0.7651
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106632 [exp]	34.29	0.7639
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.007G102500 [exp]	34.32	0.7383
AT5G59560		SRR1	SENSITIVITY TO RED LIGHT REDUC...		Potri.003G198000 [exp]	35.24	0.6609

Compare expression of checked genes

Potri.002G103066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.