Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10940 388 / 3e-131 ASG2 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) AT3G45620 123 / 1e-32 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G38480 104 / 7e-26 Transducin/WD40 repeat-like superfamily protein (.1) AT4G35140 103 / 2e-25 Transducin/WD40 repeat-like superfamily protein (.1) AT2G32950 47 / 7e-06 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT5G49430 45 / 4e-05 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) AT4G34380 45 / 4e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 42 / 0.0003 WD-40 repeat family protein / notchless protein, putative (.1) AT2G47410 42 / 0.0004 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2) AT5G16750 41 / 0.0007 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G158300 [exp] 410 / 3e-140 AT5G10940 1080 / 0.0 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Potri.009G139000 [exp] 116 / 8e-30 AT4G35140 602 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G178700 [exp] 105 / 3e-26 AT4G35140 538 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G121100 [exp] 48 / 3e-06 AT2G47410 1507 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2) Potri.014G159300 [exp] 47 / 7e-06 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G002700 [exp] 44 / 9e-05 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G021700 [exp] 43 / 0.0001 AT2G32950 686 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G144400 [exp] 42 / 0.0003 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.002G051900 [exp] 41 / 0.0004 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040537 [exp] 154 / 2e-47 AT5G10940 219 / 3e-68 ALTERED SEED GERMINATION 2, transducin family protein / WD-40 repeat family protein (.1.2) Lus10033290 [exp] 120 / 1e-31 AT3G45620 557 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10034751 [exp] 121 / 2e-31 AT3G45620 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10025088 [exp] 106 / 3e-26 AT4G35140 563 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023993 [exp] 103 / 2e-25 AT4G35140 557 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035332 [exp] 48 / 4e-06 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10029990 [exp] 48 / 4e-06 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10036881 [exp] 45 / 2e-05 AT1G24530 409 / 5e-141 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 43 / 0.0001 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 42 / 0.0003 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G103132.2 pacid=42777143 polypeptide=Potri.002G103132.2.p locus=Potri.002G103132 ID=Potri.002G103132.2.v4.1 annot-version=v4.1 ATGCATCAGGGTTGTGTCAATTCCATAGCCTGGAATTCTAAAGGTTCACTCTTGATTTCTGGATCAGATGACATACGGGTGAATATTTGGAGCTACACTG GTCGAAAGCTTTTGCTTTCTATAGATACTGGGCATTCTGCAAATATATTCTGCACTAAATTAGTTCCTGAAACATCTGACGAGCTTGTGGTTTCTGGAGC TGGAGATGCAGAAGTTTGCTTATTTAATTTTTCTCACTTAAGTGGGAGGGGTCCTGATGATAATTCTATTGCTCCATCAGCATTGTATCAATGTCATACA AGAAGAGTGAAAACATTAGCTGTTGAAGTTGGAAACCCTAATGTGGTCTGGAGTGCAAGTGAAGATGGAACACTTAGACAGCATGATTTTCGGGAGGGTG CTGCATGTCCACCAGGAGGATCTTATCCCCATGAATGTCGCAATATTCTGTCTGGAGCAAAAAGATCGTTAGCTGATCCTCCGAAACAAACCCTTGCTCT GAAATCTTGTGACATCAGTACCAGTCGACCTCATTTACTCCTGGTTGGTGGGAGTGATGCCTTTGCTCGATTATATGATAGAAGGATGCTGCCTCCACTG ACTTCCCATAGGAAAAGGATGAACCCGCCTCCTTGTGCTAACTATTTCTGCCCAATGCATCTTTCTGAGCATCTGGGGGGACTGCTGTTCGATATACTAT GGGAGATGCTTCAAAATTGA
AA sequence Show only first row Show all	>Potri.002G103132.2 pacid=42777143 polypeptide=Potri.002G103132.2.p locus=Potri.002G103132 ID=Potri.002G103132.2.v4.1 annot-version=v4.1 MHQGCVNSIAWNSKGSLLISGSDDIRVNIWSYTGRKLLLSIDTGHSANIFCTKLVPETSDELVVSGAGDAEVCLFNFSHLSGRGPDDNSIAPSALYQCHT RRVKTLAVEVGNPNVVWSASEDGTLRQHDFREGAACPPGGSYPHECRNILSGAKRSLADPPKQTLALKSCDISTSRPHLLLVGGSDAFARLYDRRMLPPL TSHRKRMNPPPCANYFCPMHLSEHLGGLLFDILWEMLQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.002G103132 [exp]	0	1
AT3G50430			unknown protein		Potri.005G133500 [exp]	4.89	0.8079
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Potri.013G092100 [exp]	5.47	0.7973
AT2G39580			unknown protein		Potri.010G208200 [exp]	9.48	0.7857
AT4G28990			RNA-binding protein-related (....		Potri.018G083100 [exp]	13.71	0.7783
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.002G103066 [exp]	16.24	0.7500
AT3G61540			alpha/beta-Hydrolases superfam...		Potri.014G090601 [exp]	21.02	0.7026
AT1G16540		ACI2, ABA3, SIR...	SIRTINOL RESISTANT 3, LOW OSMO...		Potri.007G066400 [exp]	23.87	0.7728	Pt-ABA3.1
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.002G232800 [exp]	24.18	0.7571
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Potri.018G057200 [exp]	25.09	0.7400
AT5G16610			unknown protein		Potri.017G130400 [exp]	27.11	0.7024

Compare expression of checked genes

Potri.002G103132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.