Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50010 98 / 4e-23 bHLH sequence-specific DNA binding transcription factors;transcription regulators (.1) AT5G09460 82 / 2e-17 bHLH bHLH143 sequence-specific DNA binding transcription factors;transcription regulators (.1) AT5G64340 79 / 4e-16 bHLH bHLH142, SAC51 SUPPRESSOR OF ACAULIS 51, sequence-specific DNA binding transcription factors;transcription regulators (.1) AT3G21330 54 / 1e-07 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G14760 53 / 1e-07 bHLH bHLH084 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G33880 52 / 2e-07 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) AT1G66470 52 / 2e-07 bHLH AtRHD6, RHD6, bHLH083 ROOT HAIR DEFECTIVE6 (.1) AT5G37800 51 / 7e-07 bHLH ATRSL1, bHLH086 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) AT1G27740 50 / 9e-07 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1) AT4G00120 49 / 1e-06 bHLH IND1, GT140, bHLH040, IND, EDA33 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G158100 [exp] 539 / 0 AT5G50010 130 / 4e-35 sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.007G112800 [exp] 150 / 7e-42 AT5G09460 114 / 1e-28 sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.017G048000 [exp] 139 / 1e-37 AT5G09460 106 / 7e-26 sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.005G060900 [exp] 57 / 2e-09 AT4G00120 151 / 7e-46 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G108000 [exp] 57 / 5e-09 AT4G00120 150 / 3e-45 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G044600 [exp] 54 / 4e-08 AT5G67060 150 / 7e-45 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G294300 [exp] 53 / 1e-07 AT4G33880 164 / 2e-47 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Potri.004G088900 [exp] 53 / 2e-07 AT5G37800 199 / 7e-62 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1) Potri.017G126800 [exp] 52 / 2e-07 AT5G37800 203 / 3e-63 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042647 [exp] 57 / 5e-09 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005710 [exp] 57 / 7e-09 AT3G50330 160 / 1e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10033488 [exp] 53 / 5e-08 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10011899 [exp] 54 / 1e-07 AT2G20180 290 / 6e-92 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3) Lus10033592 [exp] 53 / 1e-07 AT1G66470 174 / 5e-53 ROOT HAIR DEFECTIVE6 (.1) Lus10001068 [exp] 53 / 2e-07 AT4G33880 179 / 2e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10004315 [exp] 53 / 2e-07 AT4G33880 179 / 3e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10017634 [exp] 51 / 4e-07 AT1G66470 171 / 2e-51 ROOT HAIR DEFECTIVE6 (.1) Lus10002213 [exp] 50 / 6e-07 AT5G01310 108 / 8e-28 APRATAXIN-like (.1) Lus10022833 [exp] 50 / 3e-06 AT2G20180 310 / 5e-99 PHY-INTERACTING FACTOR 1, phytochrome interacting factor 3-like 5 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G103300.1 pacid=42779394 polypeptide=Potri.002G103300.1.p locus=Potri.002G103300 ID=Potri.002G103300.1.v4.1 annot-version=v4.1 ATGGGAGAAGATTGGGGACCTCAACAGCAATTTAATTGGCAATCACCCGATACGAATTACTTGGGTGCCTCATTTTCCTCTGGGCAGCAAAATAATCCTC CTTTGCTAATGGACCCTAATGTCAACATGATTTCTACAAATGGTCTGCCCGAATATCCATTTGCTGAGCTTCTGCGCTCGCAGGTTGGTCAGGAAAATGA ACCGCGTGGGTGGTTTTATGGTTTGCCCCGCTTCCGACAGGCCTTCATGCCTCCTTTTCATTCTGTTCTTAAAGAGAAAAGGCCTCTTTTGGACACTGTT CTCAAAGAGAAACTTCCCACTGCCCCTCGTGAAATTAAGGACATCGTGCCTCAATCAGACTCTGGTCGCGCTCAGAAAAGATTCCTTGTTTTTGACCAGT CAGGCGATCAAACAACTTTGATCTTTAGTTCTGGAATTGGGACTCCAGCCCAGTGCTTGAAGTCTTGGATCCCAAAACCGACCATTGCTTTTGATTTGAA CAAGGAAGTGACCGGGGCTAAAGAAAATCAAAGTTTTCATTTAGGGCCAATCTCAACTGATGAATTTGTTGAAGATGATGGGATCGAAATGCAAACTGAT GTGCACGAGGACATTGAAGAACTGAATGCCTTGCTTTACTCAGATGATGATAGTGACTACACCGAGGATGAAGAAGTTACTAGCACGGGTCATTCCCCTA ATACAATGACAACTCACGACAAGCGAGATTGGTTTGATGGAAGCACAGAAGATGTTGCGAGTTCTGATGGTTCAAATAAAAAGAGAAAACTGTTTGATGG AGGTTATATTGATGGTCCATCACTCATGGATACTGCCAGGTCTGTAAAACCCACTAGAGATTTTGAGTACGAGGATGATGCAGAATCGAGGTGTGACAAT GGCACGAATTTGATGTCAGAGGAAATGGGTTCAGAATCAGTAAACAAGAGGATGAGAAAAGAGAGAATTCGTGAGACAGTGAGCATTCTACAGAACCTGA TTCCAGGTGGAAAGGGCAAGGATGCAGTTATCGTTCTTGAAGAAGCTATTCAGTACTTGAAGTCGTTGAAGTTCGAAGCCAAAGCTTTAGGACTTGATGC TCCATGA
AA sequence Show only first row Show all	>Potri.002G103300.1 pacid=42779394 polypeptide=Potri.002G103300.1.p locus=Potri.002G103300 ID=Potri.002G103300.1.v4.1 annot-version=v4.1 MGEDWGPQQQFNWQSPDTNYLGASFSSGQQNNPPLLMDPNVNMISTNGLPEYPFAELLRSQVGQENEPRGWFYGLPRFRQAFMPPFHSVLKEKRPLLDTV LKEKLPTAPREIKDIVPQSDSGRAQKRFLVFDQSGDQTTLIFSSGIGTPAQCLKSWIPKPTIAFDLNKEVTGAKENQSFHLGPISTDEFVEDDGIEMQTD VHEDIEELNALLYSDDDSDYTEDEEVTSTGHSPNTMTTHDKRDWFDGSTEDVASSDGSNKKRKLFDGGYIDGPSLMDTARSVKPTRDFEYEDDAESRCDN GTNLMSEEMGSESVNKRMRKERIRETVSILQNLIPGGKGKDAVIVLEEAIQYLKSLKFEAKALGLDAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50010	bHLH		sequence-specific DNA binding ...		Potri.002G103300 [exp]	0	1
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.006G020600 [exp]	4.69	0.8312
AT1G13120		EMB1745	embryo defective 1745 (.1)		Potri.008G183500 [exp]	8.66	0.8286
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.003G204300 [exp]	11.31	0.8284
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Potri.009G161900 [exp]	11.78	0.7190	E2F1.1
AT2G37160			Transducin/WD40 repeat-like su...		Potri.006G129100 [exp]	15.23	0.7765
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.003G188700 [exp]	15.58	0.8019	SDG906,SUVH3.3
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Potri.002G230800 [exp]	16.30	0.7965
AT5G06560			Protein of unknown function, D...		Potri.016G065200 [exp]	16.73	0.7679
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.010G178600 [exp]	18.97	0.8194
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.008G183600 [exp]	21.56	0.7939

Compare expression of checked genes

Potri.002G103300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.