Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CYCD2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22490 262 / 3e-85 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT5G65420 234 / 5e-75 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT5G10440 218 / 6e-69 CYCD4;2 cyclin d4;2 (.1) AT1G70210 172 / 7e-51 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT4G34160 164 / 3e-47 CYCD3;1 CYCLIN D3;1 (.1) AT3G50070 157 / 6e-45 CYCD3;3 CYCLIN D3;3 (.1) AT5G67260 157 / 2e-44 CYCD3;2 CYCLIN D3;2 (.1) AT4G03270 123 / 1e-32 CYCD6;1 Cyclin D6;1 (.1) AT4G37630 115 / 3e-29 CYCD5;1 cyclin d5;1 (.1.2) AT1G20610 72 / 1e-13 CYCB2;3 Cyclin B2;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G157800 [exp] 468 / 9e-167 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.009G086700 [exp] 193 / 9e-59 AT1G70210 168 / 3e-49 CYCLIN D1;1 (.1) Potri.001G292300 [exp] 190 / 4e-57 AT2G22490 178 / 1e-52 Cyclin D2;1 (.1.2) Potri.008G146600 [exp] 174 / 1e-51 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.010G095200 [exp] 169 / 1e-49 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1) Potri.019G118600 [exp] 166 / 1e-48 AT4G03270 244 / 2e-79 Cyclin D6;1 (.1) Potri.013G149000 [exp] 159 / 6e-46 AT4G03270 231 / 1e-74 Cyclin D6;1 (.1) Potri.005G141900 [exp] 159 / 1e-45 AT5G67260 327 / 2e-110 CYCLIN D3;2 (.1) Potri.002G123000 [exp] 159 / 3e-45 AT4G34160 280 / 1e-91 CYCLIN D3;1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029194 [exp] 186 / 3e-56 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10010709 [exp] 179 / 2e-53 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10018739 [exp] 159 / 2e-45 AT4G34160 237 / 3e-75 CYCLIN D3;1 (.1) Lus10014089 [exp] 155 / 1e-43 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1) Lus10024796 [exp] 154 / 1e-43 AT4G34160 231 / 4e-73 CYCLIN D3;1 (.1) Lus10019825 [exp] 154 / 3e-43 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1) Lus10011507 [exp] 151 / 2e-42 AT5G67260 343 / 7e-117 CYCLIN D3;2 (.1) Lus10019317 [exp] 150 / 4e-42 AT5G67260 338 / 4e-115 CYCLIN D3;2 (.1) Lus10027874 [exp] 150 / 4e-41 AT4G34160 226 / 6e-70 CYCLIN D3;1 (.1) Lus10039738 [exp] 119 / 1e-30 AT4G03270 243 / 1e-78 Cyclin D6;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain CL0065 [poplar] [flax] Cyclin PF02984 [poplar] [flax] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G103500.2 pacid=42777674 polypeptide=Potri.002G103500.2.p locus=Potri.002G103500 ID=Potri.002G103500.2.v4.1 annot-version=v4.1 ATGGCACCAAGTTTTGATTGTGCAGTTTCAAACCTTCTATGTGCGGAAGATAATAATAGCATCTTCGATGATAACGATCACTATGATGCTACCGTGGAGG AGTTTGAGGCCACGTGGCATCATGGGAATCATCAAATCTGTAATCAAAACGGTGGTGGAGATGGCGGGTGTTTGCCGATGCAGAGTGATGAGTGTTTGGT TTTGATGGTTGAAAAGGAGTGTCAGCATTTACCTAATGGTGATTACTTGAAGAGACTGAGAAATGGAGACCTGGACATGGGGGCTAGAAAAGAGGCTGTT GATTGGATTGCAAAGGTTCATGCCCACTTTGGTTTTGGACCACTTTGTGCGTATCTATCAATAAACTACTTGGATAGATTTCTCTCTGCCTATGAATTGC CTAATGGTAAACCTTGGATGATGCAGTTACTAGCTGTGGCATGTTTATCTCTTGCGGCCAAAATGGAGGAGACTGAAGTTCCACTATCTCTAGATCTACA GGTGGGCGAATCAAGATTTGTATTTGAAGCAAGAACTATACAAAGGATGGAGCTTCTTGTATTGAGCACATTGAGTTGGAGAATGCAAGCAATTACTCCT TTCTCCTTCATAGACTATTTCCTTAGCAAGATCAATAATGATCAGACCCCCCCACCTAAGTCTTTAATCTTGCAATCAATCCATCTCATACTGAGCACAA TTAGAGGGATTTACTTCTTGGAATTTAGGCCTTCTGAGATTGCAGCAGCTGTGGCAATAGCTGTTGTGGGGGAAACCAAAACAGTGGACGCTGAGCAAGC AATTTCTGTACTCGCTCAACCTGTACAAAAGGAGAGAGTGCTGAAGTGTCTTCAACTGATTCATGATTTGTCGTTGTTTGGTGGATCTGTTAAGGGCACA AGCGCGTCACTCCTATCAGTGCCCCAAAGCCCCATTGGGGTGTTGGATGCTGCATGCTTGAGCTATAGCAGTAACCACACAACTGTTGAGCCATGTGCAA ATTCTTCACACAATACCCCGGATGCTAAAAGGAGGAAGCTAGACAAACCCTGCGAGGCGTAG
AA sequence Show only first row Show all	>Potri.002G103500.2 pacid=42777674 polypeptide=Potri.002G103500.2.p locus=Potri.002G103500 ID=Potri.002G103500.2.v4.1 annot-version=v4.1 MAPSFDCAVSNLLCAEDNNSIFDDNDHYDATVEEFEATWHHGNHQICNQNGGGDGGCLPMQSDECLVLMVEKECQHLPNGDYLKRLRNGDLDMGARKEAV DWIAKVHAHFGFGPLCAYLSINYLDRFLSAYELPNGKPWMMQLLAVACLSLAAKMEETEVPLSLDLQVGESRFVFEARTIQRMELLVLSTLSWRMQAITP FSFIDYFLSKINNDQTPPPKSLILQSIHLILSTIRGIYFLEFRPSEIAAAVAIAVVGETKTVDAEQAISVLAQPVQKERVLKCLQLIHDLSLFGGSVKGT SASLLSVPQSPIGVLDAACLSYSSNHTTVEPCANSSHNTPDAKRRKLDKPCEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22490		CYCD2;1, ATCYCD...	Cyclin D2;1 (.1.2)		Potri.002G103500 [exp]	0	1	Pt-CYCD2.1
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.007G113300 [exp]	10.72	0.7780	HAF902
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Potri.001G026000 [exp]	12.60	0.7723
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Potri.012G034300 [exp]	14.00	0.7757
AT3G01160			unknown protein		Potri.005G108800 [exp]	14.07	0.7510
AT3G49601			unknown protein		Potri.006G233000 [exp]	18.22	0.7669
AT2G06040			unknown protein		Potri.006G220600 [exp]	21.90	0.7340
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.018G110100 [exp]	27.56	0.7506
AT1G80930			MIF4G domain-containing protei...		Potri.016G121100 [exp]	30.65	0.7402
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Potri.003G144500 [exp]	31.55	0.6600
AT1G78100		AUF1	auxin up-regulated f-box prote...		Potri.002G094600 [exp]	32.49	0.7198

Compare expression of checked genes

Potri.002G103500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.