Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18475 546 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46100 210 / 4e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16420 209 / 6e-61 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62670 199 / 1e-56 RPF2 rna processing factor 2 (.1) AT1G12300 198 / 4e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16640 194 / 8e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G07740 192 / 2e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16710 189 / 5e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 191 / 2e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63150 190 / 3e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G031600 [exp] 215 / 4e-63 AT5G16420 707 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G204100 [exp] 208 / 3e-61 AT1G07740 502 / 2e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G108500 [exp] 207 / 4e-61 AT1G53330 483 / 1e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G038300 [exp] 201 / 2e-57 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.011G057900 [exp] 197 / 4e-57 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 197 / 4e-55 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 195 / 4e-55 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 195 / 1e-54 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050500 [exp] 192 / 3e-54 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005540 [exp] 618 / 0 AT5G18475 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10041927 [exp] 366 / 8e-125 AT5G18475 341 / 3e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042452 [exp] 209 / 2e-61 AT1G53330 442 / 1e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015397 [exp] 206 / 1e-60 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 200 / 5e-56 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026218 [exp] 194 / 1e-55 AT1G53330 440 / 2e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 197 / 1e-54 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 196 / 5e-54 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005989 [exp] 189 / 9e-54 AT5G16420 656 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10038377 [exp] 187 / 6e-52 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.002G103600.1 pacid=42777959 polypeptide=Potri.002G103600.1.p locus=Potri.002G103600 ID=Potri.002G103600.1.v4.1 annot-version=v4.1 ATGAATTCTGTGAAAGTTGTTATTTGCCACAAGCATCGCTCTTTCTCCTCGCTTCCATGGATCTCTCCTCTTCATTTTTTAACACCTAAATTGGACCCCC CACCCAAAACCCTTCTGGAACCACGAAGGAAACCCAAATTTATTTCTCACGAGACTGCCGTAAACTTGATCAAACATGAGCGGGATCCTCAACATGCCTT GGAAATATTTAACTTGGTAGTGGAGCAGAAGGGTTTTAATCATAATCATGCTACCTATTCAACTATAATTGATAAGCTTGCTCGAGCTAAGAAGTTTCAG GCTGTTGATGCTCTTCTTCGGCAAATGATGTATGAAACTTGCAAGTTTCATGAGAGTTTATTCCTTAATCTGATGAAGTATTTTGCCAAGTCATCTGAGT TTGAAAGAGTGGTCGAGATGTTTAATAAAATCCAGCCAATTGTTCGTGAAAAGCCATCGCTTAAAGCCATCAGCACGTGTCTGAATCTTCTGGTTGAATC AAAGCAGGTTGATTTGTTGCGGGGTTTTTTATTGGATTTGAATAAGGATCACATGCTGAAGCCAAATACCTGCATTTTCAACATCTTTATTAAGTATCAC TGTAAAAGTGGTGATCTTGAATCTGCTTTTGCAGTGGTGAAGGAGATGAAGAAGTCTAGCATTTCTTATCCTAATTTAATTACCTACTCAACTCTGATGG ATGGTCTCTGTGAGAGTGGAAGGTTAAAAGAAGCAATTGAATTGTTCGAGGAGATGGTGTCGAAGGATCAAATCTTGCCTGATGCCCTTACTTATAATGT TCTAATCAATGGTTTTTCCTGTTGGGGAAAAGTTGACCGGGCAAAGAAGATAATGGAGTTTATGAAGAGTAATGGATGTAGCCCAAATGTATTTAATTAC TCAGCCCTCATGAGTGGATTTTGCAAAGAGGGAAGGTTAGAGGAGGCCATGGATGCTTTTGAAGAGATGAAGATCTTTGGTTTGAAACAAGATACAGTTG GATACACGATACTGATAAATTACTTTTGTAGGTTTGGTAGAATTGATGAAGCCATGGCGTTGCTCGAAGAGATGAAAGAAACAAAGTGCAAAGCTGACAT TGTAACTGTTAACGTGTTACTTAGAGGATTTTGTGGAGAAGGTAGGACTGAGGAGGCGCTTGGGATGCTTAACAGACTCTCTAGCGAAGGTATTTATCTA AACAAGGCGAGTTACAGGATTGTATTGAATTCCTTGTGCCAGAAAGGTGACTTAGACAAGGCTCTTGAGCTTTTGGGTTTGACACTTAGCAGAGGCTTTG TACCCCATCATGCAACTTCAAACGAGTTGTTAGTTGGCCTTTGTAAAGCTGGAATGGCAGATGATGCAGTTGTGGCGTTGTATGGATTGGCGGAGATGGG ATTCAAACCAGAGCAAGATTCCTGGGCCCTTTTAGTTGAATTTGTATGCAGAGAGAGAAAGCTGTTACTTGCATTTGAACTGCTTGATGAGTTAACAGCA AATGAATGTGAAGATTTTGTACCTTCGTGA
AA sequence Show only first row Show all	>Potri.002G103600.1 pacid=42777959 polypeptide=Potri.002G103600.1.p locus=Potri.002G103600 ID=Potri.002G103600.1.v4.1 annot-version=v4.1 MNSVKVVICHKHRSFSSLPWISPLHFLTPKLDPPPKTLLEPRRKPKFISHETAVNLIKHERDPQHALEIFNLVVEQKGFNHNHATYSTIIDKLARAKKFQ AVDALLRQMMYETCKFHESLFLNLMKYFAKSSEFERVVEMFNKIQPIVREKPSLKAISTCLNLLVESKQVDLLRGFLLDLNKDHMLKPNTCIFNIFIKYH CKSGDLESAFAVVKEMKKSSISYPNLITYSTLMDGLCESGRLKEAIELFEEMVSKDQILPDALTYNVLINGFSCWGKVDRAKKIMEFMKSNGCSPNVFNY SALMSGFCKEGRLEEAMDAFEEMKIFGLKQDTVGYTILINYFCRFGRIDEAMALLEEMKETKCKADIVTVNVLLRGFCGEGRTEEALGMLNRLSSEGIYL NKASYRIVLNSLCQKGDLDKALELLGLTLSRGFVPHHATSNELLVGLCKAGMADDAVVALYGLAEMGFKPEQDSWALLVEFVCRERKLLLAFELLDELTA NECEDFVPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18475			Pentatricopeptide repeat (PPR)...		Potri.002G103600 [exp]	0	1
AT2G28480			RNA-binding CRS1 / YhbY (CRM) ...		Potri.007G129600 [exp]	11.22	0.6108
ATCG00630		ATCG00630.1, PS...	PSAJ (.1)		Potri.003G067501 [exp]	12.36	0.6822
AT5G58930			Protein of unknown function (D...		Potri.001G248400 [exp]	13.41	0.6370
ATCG00640		ATCG00640.1, RP...	ribosomal protein L33 (.1)		Potri.003G067400 [exp]	18.22	0.6611
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Potri.008G076800 [exp]	26.11	0.6035
AT5G49210			unknown protein		Potri.001G317300 [exp]	30.98	0.5875
AT4G18400			unknown protein		Potri.004G133260 [exp]	34.64	0.5700
AT3G06660			PAPA-1-like family protein / z...		Potri.008G106200 [exp]	35.62	0.5679
AT2G33585			unknown protein		Potri.005G257100 [exp]	35.72	0.5623
					Potri.008G224237 [exp]	45.44	0.5553

Compare expression of checked genes

Potri.002G103600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.