Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CUTA.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33740 229 / 3e-77 CUTA Nitrogen regulatory PII-like, alpha/beta (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014898 [exp] 234 / 3e-79 AT2G33740 217 / 1e-72 Nitrogen regulatory PII-like, alpha/beta (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0089 [poplar] [flax] GlnB-like PF03091 [poplar] [flax] CutA1 CutA1 divalent ion tolerance protein
Representative CDS sequence Show only first row Show all	>Potri.002G103700.1 pacid=42779250 polypeptide=Potri.002G103700.1.p locus=Potri.002G103700 ID=Potri.002G103700.1.v4.1 annot-version=v4.1 ATGGCTTCCTCAGTCTTTTCAAGAGCTGCATCAATCCTCCCTTCAACAACAATACGACGGCGTTTGCCTCTAGTCGGGGCGTTTTGCATGATAAGCTTAG GCCTCTCTAATCTATGCCCAACAAATCTCTCTTCTTCTTCTCTCAAAACGGGTAGCGCTCAATCTCTCCCCTTTATTCCTCTCTTAAGATCAAAGTTTGG CAGCAGCCAAGCAGCAGCAACACAAGCTACGAACATCAGAATGGAAGGGAATTCCGACACCGTACCAAGTATTGTTGTTTATGTTACTGTCCCTAATAGA GAAGCAGGAAAGAAATTGGCTAACAGCATAGTCAAAGAGAAGCTGGCAGCGTGTGTAAACATAGTACCAGGTATTGAATCGGTGTATCAATGGCAGGGAG AGATTCAGTCAGATGCTGAGGAACTGTTGATTATCAAGACCAGGCAATCCTTGCTGGAAGCACTAACAGAGCATGTCAAAGCAAACCATGAATATGAGGT ACCAGAAGTAATCTCCTTGCCCATCACTGGTGGAAGCATTCCATACCTAAAATGGCTCAAAGACAGCACAAGGGACTGA
AA sequence Show only first row Show all	>Potri.002G103700.1 pacid=42779250 polypeptide=Potri.002G103700.1.p locus=Potri.002G103700 ID=Potri.002G103700.1.v4.1 annot-version=v4.1 MASSVFSRAASILPSTTIRRRLPLVGAFCMISLGLSNLCPTNLSSSSLKTGSAQSLPFIPLLRSKFGSSQAAATQATNIRMEGNSDTVPSIVVYVTVPNR EAGKKLANSIVKEKLAACVNIVPGIESVYQWQGEIQSDAEELLIIKTRQSLLEALTEHVKANHEYEVPEVISLPITGGSIPYLKWLKDSTRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33740		CUTA	Nitrogen regulatory PII-like, ...		Potri.002G103700 [exp]	0	1	Pt-CUTA.1
AT1G17370		UBP1B	oligouridylate binding protein...		Potri.006G139300 [exp]	3.31	0.7675
AT4G13520		SMAP1	small acidic protein 1 (.1)		Potri.008G174000 [exp]	5.29	0.7963
					Potri.018G111650 [exp]	5.47	0.8034
AT4G18593			dual specificity protein phosp...		Potri.004G056600 [exp]	14.38	0.7924
AT4G39100		SHL1	short life, PHD finger family ...		Potri.009G121000 [exp]	16.12	0.7813	SHL1.1
AT3G11890			Sterile alpha motif (SAM) doma...		Potri.006G198500 [exp]	16.24	0.7669
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.002G105600 [exp]	21.63	0.7517
AT1G13360			unknown protein		Potri.015G054300 [exp]	23.36	0.7712
AT5G62950			RNA polymerase II, Rpb4, core ...		Potri.005G067600 [exp]	24.89	0.7881
					Potri.010G150601 [exp]	25.92	0.7709

Compare expression of checked genes

Potri.002G103700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.