Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33735 147 / 1e-46 Chaperone DnaJ-domain superfamily protein (.1) AT5G16650 142 / 9e-45 Chaperone DnaJ-domain superfamily protein (.1) AT5G01390 71 / 9e-16 DNAJ heat shock family protein (.1.2.3.4) AT4G28480 72 / 1e-15 DNAJ heat shock family protein (.1.2) AT3G08910 72 / 2e-15 DNAJ heat shock family protein (.1) AT2G20560 71 / 2e-15 DNAJ heat shock family protein (.1) AT3G62600 70 / 1e-14 ATERDJ3B DNAJ heat shock family protein (.1) AT1G59725 69 / 1e-14 DNAJ heat shock family protein (.1) AT1G10350 69 / 1e-14 DNAJ heat shock family protein (.1) AT3G47940 69 / 2e-14 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G041400 [exp] 135 / 8e-42 AT5G16650 193 / 5e-65 Chaperone DnaJ-domain superfamily protein (.1) Potri.013G078200 [exp] 134 / 2e-41 AT5G16650 198 / 6e-67 Chaperone DnaJ-domain superfamily protein (.1) Potri.006G246700 [exp] 75 / 9e-17 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 75 / 1e-16 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 74 / 4e-16 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 72 / 1e-15 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.008G123200 [exp] 72 / 2e-15 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.007G135700 [exp] 72 / 2e-15 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 71 / 6e-15 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014901 [exp] 115 / 8e-34 AT2G33735 85 / 2e-22 Chaperone DnaJ-domain superfamily protein (.1) Lus10040535 [exp] 114 / 3e-33 AT2G33735 84 / 1e-21 Chaperone DnaJ-domain superfamily protein (.1) Lus10000010 [exp] 72 / 2e-17 AT5G16650 47 / 5e-08 Chaperone DnaJ-domain superfamily protein (.1) Lus10013981 [exp] 74 / 4e-16 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10017687 [exp] 72 / 2e-15 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 72 / 2e-15 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 72 / 2e-15 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10021961 [exp] 72 / 2e-15 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10005113 [exp] 71 / 8e-15 AT1G68370 688 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Lus10008109 [exp] 71 / 1e-14 AT5G25530 401 / 1e-132 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.002G103900.1 pacid=42777420 polypeptide=Potri.002G103900.1.p locus=Potri.002G103900 ID=Potri.002G103900.1.v4.1 annot-version=v4.1 ATGATGATGTGGGACGAGTGGGACGATTCTCAAACCCAACAACAACAGCAACAACAACAACAACAACAACAACAGCCAGACCAGGATTCTTGCTTTAATT TCGATCTCCTTTCCCTTCTCTCTAGACCCAAGGATTATTATAAAATACTTGAAGTTGATTATGATGCTACGGATGATGCTATTCGATCGAACTATATACG CCTAGCACTGAAATGGCATCCCGATAAGCAAAAAGACGAGGATAGTGCCACTTCGAGATTTCAAGAGATAAACGAGGCTTACCAGGTTTTAAGTGATCCT GTCAGAAGGAGAGAATATGACAAGAAGGGGATGATGCACATCTATGATTACAACATAAGCGAGTACCTCAACCGGTACAAGGGCCTTATATTAACATGTA ATGGTCTTGGGATCAGGCATTCAATTTTATAA
AA sequence Show only first row Show all	>Potri.002G103900.1 pacid=42777420 polypeptide=Potri.002G103900.1.p locus=Potri.002G103900 ID=Potri.002G103900.1.v4.1 annot-version=v4.1 MMMWDEWDDSQTQQQQQQQQQQQQQPDQDSCFNFDLLSLLSRPKDYYKILEVDYDATDDAIRSNYIRLALKWHPDKQKDEDSATSRFQEINEAYQVLSDP VRRREYDKKGMMHIYDYNISEYLNRYKGLILTCNGLGIRHSIL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33735			Chaperone DnaJ-domain superfam...		Potri.002G103900 [exp]	0	1
AT5G43950			Plant protein of unknown funct...		Potri.014G193100 [exp]	1.41	0.8215
AT1G27650	C3HZnF	ATU2AF35A	U2 snRNP auxiliary factor smal...		Potri.002G003000 [exp]	4.47	0.7369
AT1G73820			Ssu72-like family protein (.1)		Potri.015G036600 [exp]	5.74	0.7302
AT5G01110			Tetratricopeptide repeat (TPR)...		Potri.001G139300 [exp]	6.63	0.8175
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Potri.006G197000 [exp]	10.24	0.7490
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Potri.008G090700 [exp]	11.48	0.6983
AT1G43860			sequence-specific DNA binding ...		Potri.002G073200 [exp]	11.48	0.7270
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Potri.016G075500 [exp]	12.40	0.7247
AT5G01350			unknown protein		Potri.016G118800 [exp]	13.78	0.7125
AT1G07400			HSP20-like chaperones superfam...		Potri.006G073500 [exp]	13.85	0.7505

Compare expression of checked genes

Potri.002G103900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.