Plant FIBer expression Database

Potri.002G104000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24620 1006 / 0 PGI1 phosphoglucose isomerase 1 (.1.2)
AT5G42740 153 / 8e-40 Sugar isomerase (SIS) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G118900
[exp]
145 / 6e-37 AT5G42740 973 / 0.0 Sugar isomerase (SIS) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000767
[exp]
1019 / 0 AT4G24620 1018 / 0.0 phosphoglucose isomerase 1 (.1.2)
Lus10015959
[exp]
954 / 0 AT4G24620 959 / 0.0 phosphoglucose isomerase 1 (.1.2)
Lus10007154
[exp]
147 / 2e-37 AT5G42740 953 / 0.0 Sugar isomerase (SIS) family protein (.1)
Lus10010808
[exp]
53 / 5e-07 AT5G42740 440 / 3e-149 Sugar isomerase (SIS) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0067 SIS PF00342 PGI Phosphoglucose isomerase
Representative CDS sequence
>Potri.002G104000.1 pacid=42777967 polypeptide=Potri.002G104000.1.p locus=Potri.002G104000 ID=Potri.002G104000.1.v4.1 annot-version=v4.1
ATGGCCTCTCTCTCTGGCCTCTGCTCCTCTTCTCCCTCTCTCAAACCCAAGCACTCTCTTTGGAAAACCACCCTTAATCCTCCCCTACTCAAAACCTCGC
TCACATATCGAACTCGGACTCTACTCACTCCTACTCGCTCAATCGCTAGCGATATCCCCGCCGATTTATCAAAAACAAACGACAAACTTCCGAACAAGCC
TAAACAACTCGGACTAGAAAAAGATCCTAATTCTCTATGGAGGAGATACGTTGACTGGCTCTACCAGCACAAGGAATTAGGGTTGTATTTGGATGTGAGT
CGGATCGGTTTCACGGACGAGTTTGTTTCGGAAATGGAGCCCCGATTCCATAAGGCGTTTAAGGACATGGAGGAATTAGAGAAGGGCGCGATTGCCAATC
CTGATGAAGGGAGAATGGTTGGGCATTATTGGTTGAGGAATTCAACCTTAGCGCCTAAGTCGTTTTTGAAAACTCAGATTGATAAGGCTCTTGATGCTGT
TTGTGATTTTGCTGATCAAGTCGTCAGTGGTAAGATTAAGACTCCGGACGGGGGGCGTTTTACTCAAATACTTTCTGTTGGGATTGGTGGTTCAGCTCTC
GGTCCGCAGTTTGTTGCGGAGGCATTGGCGCCCGATAATCCTCCTCTCAAGATAAGGTTCATTGATAATACAGACCCTGCTGGAATTGATCATCAGATTG
CTCAGCTTGGACCCGAGCTGGCTTCTACTCTTGTCATTGTGATTTCAAAGAGTGGAGGAACCCCTGAAACTAGAAATGGTTTGTTGGAAGTACAGCAGGC
CTTTCGTGAAGCTGGACTGGATTTTGCAAAACAGGGTGTCGCTATAACACAAGAAAATTCATTACTAGACAACACTGCAAGAATTGAGGGCTGGTTGGCT
AGATTCCCTATGTTTGATTGGGTGGGTGGTAGGACATCTGAAATGTCTGCAGTTGGCCTGCTTCCAGCAGCGCTTCAGGGGATTGACATCAGAGAAATGC
TAGCTGGTGCGGCATTGATGGATGAGGCAAATAGGACCACAGTGCTTAGGAATAACCCTGCAGCTTTGCTAGCTTTATGTTGGTATTGGGCTTCTGAGGG
GGTGGGATCTAAGGACATGGTTGTGCTTCCATACAAGGACAGCCTATTGCTATTCAGTAGGTATTTGCAACAGCTGGTCATGGAATCACTTGGAAAGGAA
TTTGATCTTGATGGTAATCGGGTAAATCAAGGACTTACCGTCTATGGAAATAAAGGGAGCACGGATCAGCATGCTTACATTCAACAACTGAGAGAAGGAG
TGCACAATTTCTTTGTAACGTTCATTGAAGTGCTACGAGATAGACCCCCTGGCCATGATTGGGAGCTTGAACCAGGTGTCACATGTGGTGACTACCTATT
TGGAATGTTACAGGGAACTCGGTCAGCTCTGTATGCCAAGGACAGGGAATCTATAACAGTCACAGTGCAAGAAGTGACCCCCAGATCTGTTGGGGCTCTT
ATTGGGCTTTATGAGCGGGCAGTTGGGATATATGCCTCACTTGTCAACATCAATGCTTATCATCAACCTGGTGTGGAAGCAGGGAAGAAAGCAGCAGGAG
AAGTTTTAGCTCTTCAGAAGCGGGTTTTGGCAGTGCTCAATGAGGCAAGCTGCAAACAGCCCGTGGAACCATTGACAATCGAGGAAGTAGCCGATCGTTG
CCATGCTACCGAAGATATTGAAATGATATACAAGATAATTGCACACATGGCTGCTAATGACAGAGCACTTATAGCTGAAGGCAGCTGTGGTTCACCGCGC
AGTCTCAAAGTTTTCCTTGGAGAGTGTAATGTGGATGAGCTATTTGCCTAA
AA sequence
>Potri.002G104000.1 pacid=42777967 polypeptide=Potri.002G104000.1.p locus=Potri.002G104000 ID=Potri.002G104000.1.v4.1 annot-version=v4.1
MASLSGLCSSSPSLKPKHSLWKTTLNPPLLKTSLTYRTRTLLTPTRSIASDIPADLSKTNDKLPNKPKQLGLEKDPNSLWRRYVDWLYQHKELGLYLDVS
RIGFTDEFVSEMEPRFHKAFKDMEELEKGAIANPDEGRMVGHYWLRNSTLAPKSFLKTQIDKALDAVCDFADQVVSGKIKTPDGGRFTQILSVGIGGSAL
GPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTLVIVISKSGGTPETRNGLLEVQQAFREAGLDFAKQGVAITQENSLLDNTARIEGWLA
RFPMFDWVGGRTSEMSAVGLLPAALQGIDIREMLAGAALMDEANRTTVLRNNPAALLALCWYWASEGVGSKDMVVLPYKDSLLLFSRYLQQLVMESLGKE
FDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFVTFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYAKDRESITVTVQEVTPRSVGAL
IGLYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLALQKRVLAVLNEASCKQPVEPLTIEEVADRCHATEDIEMIYKIIAHMAANDRALIAEGSCGSPR
SLKVFLGECNVDELFA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G24620 PGI1 phosphoglucose isomerase 1 (.1... Potri.002G104000
[exp]
0 1
AT2G39930 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLAS... Potri.006G070800
[exp]
27.92 0.6780
AT4G35590 RKD5 RWP-RK domain-containing 5, RW... Potri.005G101000
[exp]
53.32 0.6738
AT1G63770 Peptidase M1 family protein (.... Potri.001G102051
[exp]
57.33 0.6737
AT3G18860 transducin family protein / WD... Potri.009G112184
[exp]
58.10 0.6764
AT4G18270 ATTRANS11 ARABIDOPSIS THALIANA TRANSLOCA... Potri.011G080600
[exp]
79.74 0.6419
AT1G56570 PGN PENTATRICOPEPTIDE REPEAT PROTE... Potri.005G010900
[exp]
80.83 0.6605
AT1G63770 Peptidase M1 family protein (.... Potri.001G101975
[exp]
84.82 0.6596
AT3G06540 AthREP Rab escort protein (.1) Potri.005G028900
[exp]
122.37 0.6119
AT3G53810 Concanavalin A-like lectin pro... Potri.009G036300
[exp]
130.07 0.6298
AT5G60280 Concanavalin A-like lectin pro... Potri.009G036500
[exp]
136.44 0.6258

Potri.002G104000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.