Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24610 1508 / 0 unknown protein AT5G65440 1158 / 0 unknown protein AT5G48310 846 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G172000 [exp] 941 / 0 AT5G48310 1350 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000766 [exp] 1797 / 0 AT4G24610 1499 / 0.0 unknown protein Lus10015962 [exp] 1764 / 0 AT4G24610 1476 / 0.0 unknown protein Lus10016071 [exp] 900 / 0 AT5G48310 1328 / 0.0 unknown protein Lus10025189 [exp] 858 / 0 AT5G48310 1258 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G104100.8 pacid=42778687 polypeptide=Potri.002G104100.8.p locus=Potri.002G104100 ID=Potri.002G104100.8.v4.1 annot-version=v4.1 ATGTTCCGTGAAGGACCTGACAGCCGTTGGGCTCGAGAGAAGCAGAAAGAAGCAACTGCATTCGCACATTCAAGTTTAAGACCTAGAATTGATCCAATTA GAAACGGCCGAGGGTTTGGCTTACCTCCAGCTTCTAAATTCAGAAGTGGACACTTGCCATCCTCGGCAATTCCGTTACCTAGAACCCTACCGCCTGATGC CGATGATAGCCGGTCTGTCTCAGACAATGACATGGTCACGGAGTCAGACGAGGATGATGTTTATGGTGGACGGTATTCCTTAGATTCATCTCCACAGGAC GAAAAAGTCCCCAATTCCACCACTAATCAACGAAGATATGGAAATGCTGCCCGAAGGACCTCGCGATATGCCAGTGATTATGGGTACTCTGATGTTAGTT CTTCTATGGAGACTGTGGCAGGTAGAGGGGGGAATTTCTCTGAGAGTTTGGTTAGAGGGAATGCGCGGTATGCTTCTGTTGGAAGGAATGGTTATACGGA GGATGAGGAAGAGGGATCAGATTCGGCAGGTAGTTCAGAGTTTTCTGCCAGTCAAGTTGGGAGTGTTAGTAGTGCTTTGCCGAGGAGTAAATTACATGTT TCAGAGGGTTATGCTTCAAGTGTACCTTCTCAAGCTAATGTAGAAACTGTTGCTGCCAAGGATTTGCATTCCAGAAACCTGAAGAATAATAAATTTTCTC ATGATGATGACATTCCCAGTGCGCCTCCATTTTGTGGAGGTCAGGAAATTAAAGAAGGTGCCCAAAAAGCATTTGGAATACATGAAGCAGCTGGCCCTGA AAATTCACATGGTCTCTATACCAATAATGATCCAAATAAAATAAAAAATGCAACCGGAGTTGAACTGAAGGACAATAGTGGAGACCAGAATCCAGATAAG TTTGTAAGAGCAACTGCTGGTGCAGAAGCTGGCACATCTGGCTCAAACCCAGCTCGAGTCCCAACATTTCATGCAAGTGCATTGGGGCCATGGCATGCTG TAATTGCATATGATGGGTGCGTGCGGCTTTGCCTTCATGCTTGGGCTAGGGGTTGCATGGAAGCACCAATGTTCTTGGAAAATGAATGTGCTTTACTACG GGAGGCATTTAGTGTACATCACGTGCTACTACAATCAGAAGAGGAACTATTGGCAAAGCGCTCTTCTGAGCTTGTTTGTGAGGGAGCTGCCCCAAAGCCT AAGAAAATAATTGGGAAGATGAAGGTGCAAGTCCGTAAAGTTAAAACAAGTCTCGACCCTCCCAGTGGCTGTAGTATTTCAGCTCTTTCAGCACCAAAGC TAAAATTGGATGTGGTCCAGTATCGCTTATCCAAGTTTCAGTCATCGCTTTCTTCTGCTTGGAAAACTTTTCGAAAAATCCGTGTCGCCCCTCGTGTGCC TGCAAATGGTTCTTTCTCACGCCAAAGCTTGGCATATGTGCATGCCAGCACTCAGTACATCAAACAGGTTTCAGGACTTCTGAAGATTGGTGTTACTAGT CTACGCAACAGCTCATCATCATATGAAGTTGTGCAAGAAACTTACTCCTGCTCATTGAGACTGAAAAGTTCAGCAGAAGAGGATGCCATCAAGTTGCAGC CTGGATCTGGTGAAACTCATGTATTCTTTCCAGATAGTCTAGGGGATGATCTAATTGTTGAAGTACTAGATTCCAAAGGGAAATATTATGGCCGTGTCCT TGCTCAAGTCGCTAGTATTGCTGAAGACTCGGTTGATAAGCTCCGCTGGTGGTCTATATACCGAGAACCAGAACATGAGCTTGTGGGCAAACTGCAGCTC TACATAAATTACTCAACAAGTTCAGATGACAGTAATCTCAAGTGTGGCTCTGTAGCCGAAACTGTTGCGTATGACCTCGTTCTAGAAGTTGCCATGAAGG TTCAACATTTTCAACAAAGGAATCTATTGCTTTATGGTTCATGGAAATGGCTCCTAGCTGAATTTGCCACATATTATGGAGTATCCGATGTCTATACCAA GCTGAGGTACCTTTCATATATAATGGATGTAGCTACACCAACAGCTGACTGCCTGACTTTGGTGTATGATTTGTTAAAGCCTGTTATTATGAAGGGCCAC AACAAGAGCATGCTGAGTCATCAAGAGAACCGAATCCTGGGAGAAATCAAGGATCAGATTGAACAGGTTCTTTCTGTTGGTTTTGAGAACTACAAGTCTC TTGATGAATCATCACTGTCTGGTATTATGGATGTGTTCAAGCCTGCAACTGGGCTTGCAGCACCTGCCTTGGAGCCTGCTGTCAAGCTTTATACTCTTCT TCACGACATACTGTCTCCGGAGGCACAAACAAATTTAACTCATTATTTCCAGGCTGCAGCCAAGAAAAGATCAAGAAGGCACTTGACCGAGACAGATGAA TTTGTTAACAACAATAATGAAGCAACATTGATGGATTCTGTTGCTATGTCTACTGCTTATCAGAAGATGAGTTCTCTTTGTATGAACATAAAAAATGAAA TTCAGACTGACATCGAAATACACAATCAACATATACTTCCCAGTTTCATAGACCTTCCAATTTTATCTTCGTCCATATACAGCACAGAGCTTTGTAGTAG ACTGCGTGCTTTCTTGCTTGCATGCCCCCCATCCGGTCCTTCACCCCCTGTAGCAGAACTTGTTATTGCAACAGCTGATTTTCAGAGGGACCTTGCAAGC TGGAACATTAGTCCTGTGAAAGGAGGAGTGGATGCAAAAGAACTGTTTCATCTGTATATCATGATATGGATACAAGACAAGCGCCTTTCTTTGCTGGAAT CGTGCAAATTAGACAAGGTAAAATGGTCAGGTGTCAGGACGCAACATTCTACAACCCCCTTTGTGGATGACATGTATGACCGCCTTAGAGATACACTGGA ACAGTATGAAGTAATTATATGCAGATGGCCAGAGTATATCTTTGTTCTAGAGAATGCTATTGCTGATGTCGAAAAGGCTATAGTGGAAGCTTTGGACAAG CAATATACAGACGTTCTAGCACCATTGAAGGAGAACTTGGAACCTTCGAAATTCGGCCTCAAGTATGTGAAGAAGCTTACAAAACGATCTGTTTGCTCAT ATATTGTCCCTGATGAGCTTGGAATTCTGCTTAATTCCATGAAGAGGATGCTTGATGTCCTGCGTCCCAAGATAGAAACTCAATTTAAGGCATGGGGTTC TTGCATGCCTAATGGTGGACACACTGCTCCTGGAGAGCGTCTTAGTGAAGTGACTGTCATGCTAAGAGCCAAATTTAGAAGTTATCTGCAGGCTGTTGTA GAAAAGCTAGCAGAGAATACCAAATTACAGAATCCTACAAAATTGAAAAAGATTCTCCAAGAATCAAAGGAATCAATGGTTGAATCTGATATTCAAAGTA GGATGCAGCCACTGAAAGACCAGCTGACAAACACAATTACCCACCTGCAATCTGTTTTTGAGACTCATGTCTTTGTTGCTATCTGCCGAGGTTACTGGGA CCGAATGGGGCAGGATGTTCTGAGCTTCTTGGAGAACAGGAAAGAAAATCGATCATGGTATAAAGGTTCACGAATTGCAGTGTCTGTCTTGGATGATACC TTTGCCTCGCACATGCAGCAGCTGCTCGGAAATGCACTGCAGGAGAAAGACCTCGAGCCTCCTAGATCGATCATGGAAGTTCGCTCAATGCTCTGCAAGG ATGCTCCAAATCACAAAGACAGCACCTATTACTATTAA
AA sequence Show only first row Show all	>Potri.002G104100.8 pacid=42778687 polypeptide=Potri.002G104100.8.p locus=Potri.002G104100 ID=Potri.002G104100.8.v4.1 annot-version=v4.1 MFREGPDSRWAREKQKEATAFAHSSLRPRIDPIRNGRGFGLPPASKFRSGHLPSSAIPLPRTLPPDADDSRSVSDNDMVTESDEDDVYGGRYSLDSSPQD EKVPNSTTNQRRYGNAARRTSRYASDYGYSDVSSSMETVAGRGGNFSESLVRGNARYASVGRNGYTEDEEEGSDSAGSSEFSASQVGSVSSALPRSKLHV SEGYASSVPSQANVETVAAKDLHSRNLKNNKFSHDDDIPSAPPFCGGQEIKEGAQKAFGIHEAAGPENSHGLYTNNDPNKIKNATGVELKDNSGDQNPDK FVRATAGAEAGTSGSNPARVPTFHASALGPWHAVIAYDGCVRLCLHAWARGCMEAPMFLENECALLREAFSVHHVLLQSEEELLAKRSSELVCEGAAPKP KKIIGKMKVQVRKVKTSLDPPSGCSISALSAPKLKLDVVQYRLSKFQSSLSSAWKTFRKIRVAPRVPANGSFSRQSLAYVHASTQYIKQVSGLLKIGVTS LRNSSSSYEVVQETYSCSLRLKSSAEEDAIKLQPGSGETHVFFPDSLGDDLIVEVLDSKGKYYGRVLAQVASIAEDSVDKLRWWSIYREPEHELVGKLQL YINYSTSSDDSNLKCGSVAETVAYDLVLEVAMKVQHFQQRNLLLYGSWKWLLAEFATYYGVSDVYTKLRYLSYIMDVATPTADCLTLVYDLLKPVIMKGH NKSMLSHQENRILGEIKDQIEQVLSVGFENYKSLDESSLSGIMDVFKPATGLAAPALEPAVKLYTLLHDILSPEAQTNLTHYFQAAAKKRSRRHLTETDE FVNNNNEATLMDSVAMSTAYQKMSSLCMNIKNEIQTDIEIHNQHILPSFIDLPILSSSIYSTELCSRLRAFLLACPPSGPSPPVAELVIATADFQRDLAS WNISPVKGGVDAKELFHLYIMIWIQDKRLSLLESCKLDKVKWSGVRTQHSTTPFVDDMYDRLRDTLEQYEVIICRWPEYIFVLENAIADVEKAIVEALDK QYTDVLAPLKENLEPSKFGLKYVKKLTKRSVCSYIVPDELGILLNSMKRMLDVLRPKIETQFKAWGSCMPNGGHTAPGERLSEVTVMLRAKFRSYLQAVV EKLAENTKLQNPTKLKKILQESKESMVESDIQSRMQPLKDQLTNTITHLQSVFETHVFVAICRGYWDRMGQDVLSFLENRKENRSWYKGSRIAVSVLDDT FASHMQQLLGNALQEKDLEPPRSIMEVRSMLCKDAPNHKDSTYYY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24610			unknown protein		Potri.002G104100 [exp]	0	1
AT4G27640			ARM repeat superfamily protein...		Potri.008G085800 [exp]	2.44	0.8283
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Potri.004G137100 [exp]	3.00	0.8252
AT3G11130			Clathrin, heavy chain (.1)		Potri.010G186900 [exp]	10.00	0.8292
AT2G19160			Core-2/I-branching beta-1,6-N-...		Potri.006G076600 [exp]	11.00	0.8058
AT3G14172			unknown protein		Potri.019G064000 [exp]	12.24	0.7867
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Potri.005G176700 [exp]	12.80	0.8237
AT4G32640			Sec23/Sec24 protein transport ...		Potri.013G035800 [exp]	26.83	0.7599	CEF.2
AT1G16330		CYCB3;1	cyclin b3;1 (.1)		Potri.008G083200 [exp]	29.58	0.8212
AT1G67180			zinc finger (C3HC4-type RING f...		Potri.004G106000 [exp]	31.17	0.8209
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Potri.007G110800 [exp]	31.85	0.8125

Compare expression of checked genes

Potri.002G104100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.