Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49710 263 / 6e-89 unknown protein AT4G24590 227 / 8e-75 unknown protein AT1G44770 72 / 1e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G157500 [exp] 335 / 3e-117 AT5G49710 242 / 7e-81 unknown protein Potri.002G084900 [exp] 74 / 2e-15 AT1G44770 234 / 7e-77 unknown protein Potri.005G176500 [exp] 71 / 2e-14 AT1G44770 247 / 5e-82 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015965 [exp] 244 / 2e-81 AT5G49710 274 / 2e-93 unknown protein Lus10000765 [exp] 234 / 2e-77 AT5G49710 261 / 3e-88 unknown protein Lus10014131 [exp] 63 / 1e-11 AT1G44770 295 / 6e-101 unknown protein Lus10034500 [exp] 61 / 7e-11 AT1G44770 287 / 1e-97 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G104200.1 pacid=42778096 polypeptide=Potri.002G104200.1.p locus=Potri.002G104200 ID=Potri.002G104200.1.v4.1 annot-version=v4.1 ATGGAACTCGAGGTTTCCAGTCCGATATCTTCGTCGGCTGTGGATTTGGAGGAGAGAAACAAGCAAACAGACAAGGATCAAGTTCGCGTGAGGAGAAAAA CCTTGGTGGTGGTACTGGAGCAGTGCCAGAGAGCTCTTGAATTGCTAAACAACACTGACAGCGTTGAAGATGACGATGAAGGAGATACCAGTGGCGCAGA ATCCAGGGAAGTGGAGTCGTCTCCGAGCCGAGACTGCTCATCAACTTCTTTCGGCGATCGAGAAGCCGATGAGTTATGCGACCTCCTCAAATCAAGAGTT GAATGCCCTGAATTTCTTGAGAAGCTAGAGTTAGAGTGTGCTCAACTGCCAGGTTCACAATACATTACTGAAGATGGTAGTTCCTGGGACATGGTCAGTG GGGATGATCTCTGGGAAGGTGAAAATGATGGATCAGATCAGGAAGATTATGTTCTTGTCCAGCAAGAAGATATAGTAGAGGGTATCGCTTGCTTCATGGC TGCCTATTTGTTGTCCCTTAAACAGACAAAGGACTTGGCCCCTGCACAACTCCAGGAAGCCCTTAGCAAGACATTCTCAGTCAAAAAGAAAACAGGAAAG CTTCGGAAGGCCTGGGATGGAAGCAAAATCATTTATAATGCAGCCTCTTGGGGAGCAACTGCCATTGGGTTATATCAAAACCCTGTGCTCTTCAGGGCTG CCTCTAAAGCCTTCTGGACTTCCTGTCATGTTATGTCCAAGCTTCTCTGA
AA sequence Show only first row Show all	>Potri.002G104200.1 pacid=42778096 polypeptide=Potri.002G104200.1.p locus=Potri.002G104200 ID=Potri.002G104200.1.v4.1 annot-version=v4.1 MELEVSSPISSSAVDLEERNKQTDKDQVRVRRKTLVVVLEQCQRALELLNNTDSVEDDDEGDTSGAESREVESSPSRDCSSTSFGDREADELCDLLKSRV ECPEFLEKLELECAQLPGSQYITEDGSSWDMVSGDDLWEGENDGSDQEDYVLVQQEDIVEGIACFMAAYLLSLKQTKDLAPAQLQEALSKTFSVKKKTGK LRKAWDGSKIIYNAASWGATAIGLYQNPVLFRAASKAFWTSCHVMSKLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49710			unknown protein		Potri.002G104200 [exp]	0	1
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.010G192600 [exp]	1.00	0.8211
AT3G51840		ATG6, ATSCX, AC...	acyl-CoA oxidase 4 (.1)		Potri.016G118000 [exp]	3.00	0.7926
AT5G15080			Protein kinase superfamily pro...		Potri.004G123800 [exp]	3.46	0.8135
AT1G62790			Bifunctional inhibitor/lipid-t...		Potri.001G119000 [exp]	4.24	0.7784
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Potri.004G035500 [exp]	6.70	0.7846
AT1G19025			DNA repair metallo-beta-lactam...		Potri.007G106700 [exp]	6.92	0.7170
AT2G31570		ATGPX2	glutathione peroxidase 2 (.1)		Potri.007G126600 [exp]	7.93	0.7125
AT3G14130			Aldolase-type TIM barrel famil...		Potri.003G069400 [exp]	8.48	0.7386
AT3G53670			unknown protein		Potri.006G082100 [exp]	9.89	0.7406
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.006G194100 [exp]	10.48	0.7293	SINAT2.2

Compare expression of checked genes

Potri.002G104200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.