Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24580 793 / 0 REN1 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) AT5G19390 605 / 0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) AT5G12150 588 / 0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2) AT1G16750 53 / 9e-07 Protein of unknown function, DUF547 (.1) AT3G13000 48 / 2e-05 Protein of unknown function, DUF547 (.1.2) AT4G33130 43 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G157400 [exp] 1303 / 0 AT4G24580 786 / 0.0 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) Potri.001G275200 [exp] 648 / 0 AT5G19390 1080 / 0.0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) Potri.009G069700 [exp] 644 / 0 AT5G19390 1060 / 0.0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) Potri.007G003900 [exp] 52 / 2e-06 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036167 [exp] 709 / 0 AT4G24580 697 / 0.0 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) Lus10036048 [exp] 343 / 8e-112 AT5G19390 414 / 3e-142 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) Lus10005733 [exp] 342 / 2e-110 AT4G24580 350 / 1e-113 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) Lus10036047 [exp] 182 / 2e-48 AT5G19390 635 / 0.0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) Lus10034787 [exp] 52 / 3e-06 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [poplar] [flax] PH PF00169 [poplar] [flax] PH PH domain CL0409 [poplar] [flax] GAP PF00620 [poplar] [flax] RhoGAP RhoGAP domain CL0409 [poplar] [flax] PF14389 [poplar] [flax] Lzipper-MIP1 Leucine-zipper of ternary complex factor MIP1
Representative CDS sequence Show only first row Show all	>Potri.002G104300.2 pacid=42779141 polypeptide=Potri.002G104300.2.p locus=Potri.002G104300 ID=Potri.002G104300.2.v4.1 annot-version=v4.1 ATGACTAACAACAAAAACACGGAATCTTCCAAGGGAGACGGCGGCCCCCCTCCTCCACCTCCACCTCCAGCACCAGGACAACTTGAAAATATGCGTTTTC ACGGTGGCAATGTGATTTTCAAGAGCGGGCCGCTTTTTATTTCATCCAAAGGAATTGGATGGACATCCTGGAAGAAAAGGTGGTTTATTCTAACAAGAAC ATCACTGGTTTTCTTCAGAAGCAATCCGAGTGCTATTCCTCAGAAGGGGAGTGAAGTGAACCTGACCCTCGGTGGTATTGACCTCAACAATTCAGGCAGT GTGGTTGTCAGAGCAGATAAAAAGCTCTTGACTGTTCTCTTTCCTGATGGCCGTGATGGACGGGCATTCACTCTCAAGGCTGAAACTTCTGAAGATTTAT ATGGATGGAAGACTGCTCTTGAGAATGCTCTGGCACAGGCACCAAGCACCTCTCTTGTGATGGGGCAAAATGGTATATTCCGAGATGATCAGGCTGATGG AGCTGATGGTTCTTTGGAACAGTTGAAGGATAAGCATCCTGTAAAATCTTTGGTCATTGGCAGACCGATTTTACTTGCTATAGAAGATGTTGATGGATCT CCATCTTTTCTGGAGAAGGCTTTAAGGTTTATAGAAGACCATGGAATAAAGGTGGAAGGCATCTTGCGGCAAGCTGCAGATGTTGATGATGTTGAGCATC GAATAAAAGAATATGAGCAGGGAACAACTGAGTTCTCTCCGAAGGAGGATGCACATGTCATTGCTGATTGTGTCAAGTATTTCCTCCGAGAGTTGCCATC ATCTCCAGTCCCCACATCATGCTGCAATGCACTGCTTGAAGCATGGCGAACTGATCGTGGCAGTAGGGTAAATGCCATGCGGGTGGCAGTATGTGAAACG TTCCCAGAGCCAAACCGTCGATTATTGCAGAGAATTCTTCTAATGATGCAAACTGTAGCTTCTCACAAAGCTGTAAACCGAATGAGCACTTCTGCTGTGG CTGCTTGTATGGCACCCTTACTTCTTCGTCCTCTTCTAGCCGGTGACTGTGAAATTGAATCCAATTTTAATGTGGGGGGCGATGGTTCCATTCAGCTTCT GAAAGCAGCAGCTGCAGCTAATCATGCACAAGCCATTGTTATAACATTATTGGAAGAGTATGAAAAAATATTCAGTGAAGGTTCCATGTCCCCAGGACTG TACTCTGATTCAGATGAATGTGGAAGCGAGGATGAGGAGGTAACTGATGATGATGAGTCTTATGTAGATGACGCAACAGAAGAATCTGATGTATATACAG ACGCTGATAATGACAATGCATCAAGTGGAACCTGCACTCAGAGCGGTGACTCTTGCGAAGATGATCCATCTGACCATGAGGGCAGTGATGATCTTAGTTC TGGTTTCAAGTACCCTGAAGCTGAGGTAGACAATGATTTGAAAGTTGAACAAAAGTTGTCATCACATCCAGTTCAAGCTTCATTGCCTGATACACCAGAT CAAAGCAACTACAGTTTGGCAATGCTGCCAGATAAGTCAGATGACCTGTCTGTTGATGTTTCTACTGAAACAAGTTTGGAGAATAAGATTGCTGATTATA ATGCATCCCCAAATGCTAAAAAAACTACCACTATATCAAATGGACTTGTGCGCGGCAAGCGTCCAACTGTTTGGGGACGTACTGCTGCAAAGAAGAACCT TTCTATGGAATCCATTGATTACCCTATTGAGGAAGATGTTGAAATCCAGAAGCTGGAGGCAACTAAAATTGAGATGCAAAATATAATTTCTGAAGAGGTC AAAGGTAATGCCATTTTGCAAGCCAACTTGGAAAAACAAACGAAGGTGTTTCACGAGTATCGTCTAGCTCTCCAGCAAGATGTAGCAAGACTACAGGAAC AGCTGCAAAAGGAGAGAGAGAAGAGAAAATTTCTGGAAGCAGGACTTAACACTTCCAAGGGACCCTTGCAAGTTCCAGTCACAATTGATGAAAAAATGAA GGCAGAGCTTGAGGAAATAACTCAAGCAGAGGCAGATGTTGCCAATTTGAAGCAGAAGGTTGATGATCTACATGCGCAGCTTAATCAACAGTGTGATGAA CGCTCTGGTTCTATGCATGGTTTGGGCAATCAGCCTATGAATGCTTCATTACATAAGGCGAAAGGGAATGGTGAAGAGAAGGATGCTGAAGCTACTGCTT CTTCACAATTTGGACGTTCTGCAAGCAAGGATACGTGTATGGATGGAGCTGAAACCCAGCAGCTGGATTCAAAACATTGTGGCAACTCCAGACCCATTTC TTCAACCAATTCCAAGAGGTCTGGTGCAAGGAGTGAGGGAATGAATTCCACCACTTCTGCATTGACAAGGTTGACAACCCGGCTCAACTTTCTGAAGGAG CGGCGTAGCCAGATTGCGAATGAACTCCAGAATATGGACAAGGGCCGAGGTTCAGATCTAAAACTCGAGAAGGGCCGAGGTTCAGAAATATATTCGGTTC AAAATCTAGAAAAAGGTAAAGGATTGGAATGTCTGGGAGAAGAAGAGGGAAAACCACTTCAGAATTCTGAAAAATCTACAACATCAGATAGTCAATCACT GCAGGACCTAGATGGTGGACAATATTCAGAAGATCGGCATCTGCGAAGTTTGGAAAGAGGAAAATCTGATGGCCATGTATCCTATAATGCAGGCAGAGGT AAACCTCTGGTGGCTCCAAGGATTAATTCGAGATGA
AA sequence Show only first row Show all	>Potri.002G104300.2 pacid=42779141 polypeptide=Potri.002G104300.2.p locus=Potri.002G104300 ID=Potri.002G104300.2.v4.1 annot-version=v4.1 MTNNKNTESSKGDGGPPPPPPPPAPGQLENMRFHGGNVIFKSGPLFISSKGIGWTSWKKRWFILTRTSLVFFRSNPSAIPQKGSEVNLTLGGIDLNNSGS VVVRADKKLLTVLFPDGRDGRAFTLKAETSEDLYGWKTALENALAQAPSTSLVMGQNGIFRDDQADGADGSLEQLKDKHPVKSLVIGRPILLAIEDVDGS PSFLEKALRFIEDHGIKVEGILRQAADVDDVEHRIKEYEQGTTEFSPKEDAHVIADCVKYFLRELPSSPVPTSCCNALLEAWRTDRGSRVNAMRVAVCET FPEPNRRLLQRILLMMQTVASHKAVNRMSTSAVAACMAPLLLRPLLAGDCEIESNFNVGGDGSIQLLKAAAAANHAQAIVITLLEEYEKIFSEGSMSPGL YSDSDECGSEDEEVTDDDESYVDDATEESDVYTDADNDNASSGTCTQSGDSCEDDPSDHEGSDDLSSGFKYPEAEVDNDLKVEQKLSSHPVQASLPDTPD QSNYSLAMLPDKSDDLSVDVSTETSLENKIADYNASPNAKKTTTISNGLVRGKRPTVWGRTAAKKNLSMESIDYPIEEDVEIQKLEATKIEMQNIISEEV KGNAILQANLEKQTKVFHEYRLALQQDVARLQEQLQKEREKRKFLEAGLNTSKGPLQVPVTIDEKMKAELEEITQAEADVANLKQKVDDLHAQLNQQCDE RSGSMHGLGNQPMNASLHKAKGNGEEKDAEATASSQFGRSASKDTCMDGAETQQLDSKHCGNSRPISSTNSKRSGARSEGMNSTTSALTRLTTRLNFLKE RRSQIANELQNMDKGRGSDLKLEKGRGSEIYSVQNLEKGKGLECLGEEEGKPLQNSEKSTTSDSQSLQDLDGGQYSEDRHLRSLERGKSDGHVSYNAGRG KPLVAPRINSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Potri.002G104300 [exp]	0	1
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Potri.004G218500 [exp]	1.41	0.9287	MLO4.1
AT1G03620			ELMO/CED-12 family protein (.1...		Potri.013G136200 [exp]	2.82	0.9030
AT5G62865			unknown protein		Potri.012G078300 [exp]	8.00	0.8914
AT4G03965			RING/U-box superfamily protein...		Potri.002G224200 [exp]	8.48	0.8701
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Potri.006G010500 [exp]	16.12	0.8644	Pt-GDI1.1
AT3G55430			O-Glycosyl hydrolases family 1...		Potri.008G056000 [exp]	18.33	0.8823	Pt-GNS2.1
AT1G80370		CYCA2;4	Cyclin A2;4 (.1)		Potri.003G058200 [exp]	18.97	0.8810
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.001G120300 [exp]	19.23	0.8840	SKU5.2
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Potri.011G056800 [exp]	21.00	0.8451
AT2G12646			PLATZ transcription factor fam...		Potri.006G060500 [exp]	22.36	0.8218

Compare expression of checked genes

Potri.002G104300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.